Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0590
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1240 + 25095472-25095942,25096021-25096314,25096563-250973... 31 1.2
02_05_0583 + 30128795-30129158,30129342-30129505,30129602-301296... 29 2.7
04_01_0224 - 2830669-2830969,2831049-2831219,2831302-2832134,283... 29 3.6
03_04_0008 - 16274158-16274458,16274791-16275623,16275706-162761... 29 4.7
11_06_0576 - 25127807-25128107,25128241-25128357,25128730-251292... 28 6.2
03_06_0690 - 35571816-35572586 28 6.2
09_06_0199 + 21526872-21527250,21527431-21527594,21527673-215277... 28 8.3
08_02_0778 + 21119812-21119941,21120030-21120463,21120576-211206... 28 8.3
06_01_0956 + 7374273-7374356,7374502-7374963,7375043-7375673,737... 28 8.3
05_07_0085 - 27591909-27592152,27592232-27592402,27592485-275926... 28 8.3
>07_03_1240 +
25095472-25095942,25096021-25096314,25096563-25097383,
25097466-25097636,25097716-25098016
Length = 685
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -1
Query: 301 KFLRCSTASSKSSWCPMICMPKYSKSSHLNINNL--VPFKPLARICGTYWAPHASSPDIH 128
+++ C+ + + W ++ +PK+S+ ++LN NN F + + W P+ H
Sbjct: 577 EYIMCAH-NQERHWILLVIIPKWSRVTYLNSNNFKDYDFSEITKALNMAWGPYVEKGGRH 635
>02_05_0583 +
30128795-30129158,30129342-30129505,30129602-30129665,
30130082-30130215,30130369-30130452,30130580-30130654,
30130734-30130805,30130892-30130965,30131217-30131269,
30131388-30131497,30131824-30131892,30131975-30132049,
30132449-30132508,30132555-30132647,30132718-30132797,
30132877-30132976,30133153-30133590
Length = 702
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 342 FLTHLAKTVKKYPSIRNMQIFYILNVYKSHNKLSIA 449
F T L KT + YP + NM F++ + K N + +A
Sbjct: 533 FHTSLDKTRRFYPHVNNMDGFFVAKLKKLSNTIPVA 568
>04_01_0224 -
2830669-2830969,2831049-2831219,2831302-2832134,
2832216-2832677,2832756-2833489,2833578-2833707
Length = 876
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -1
Query: 301 KFLRCSTASSKSSWCPMICMPKYSKSSHLNINNL--VPFKPLARICGTYWAPHASSPDIH 128
+++ C T + + W ++ +PK+S+ ++LN N F + + W P+ H
Sbjct: 768 EYIMC-THNQERHWILLVIVPKWSRVTYLNSNKSKDYDFSEITKALNMAWGPYVEKGGRH 826
>03_04_0008 -
16274158-16274458,16274791-16275623,16275706-16276167,
16276245-16276882,16277068-16277197
Length = 787
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = -1
Query: 304 TKFLRCSTASSKSSWCPMICMPKYSKSSHLNINNL--VPFKPLARICGTYWAPHASSPDI 131
T L+C T+ W ++ +PK+S+ ++LN N F + + W P+
Sbjct: 680 TGLLKCYTSQH---WILLVIVPKWSRVTYLNSNKSKDYDFTEITKALNMAWGPYVEKGGR 736
Query: 130 H 128
H
Sbjct: 737 H 737
>11_06_0576 -
25127807-25128107,25128241-25128357,25128730-25129271,
25129353-25129814,25129893-25130626,25130715-25130742
Length = 727
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -1
Query: 274 SKSSWCPMICMPKYSKSSHLNINNL--VPFKPLARICGTYWAPHASSPDIH 128
++ W ++ +PK+SK ++LN N F + + W P+ H
Sbjct: 627 NRRHWILLVIVPKWSKVTYLNSNKSKDYDFSEITKALNMAWGPYVEKGGRH 677
>03_06_0690 - 35571816-35572586
Length = 256
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +3
Query: 120 VAEWMSGLDACGAQYVPQMRAKGLNGTRLLMLRCDDLEYLGMHIIGHQELLLEAVEHLR 296
V W+ GL ++Y P ++ L +L +DL+ +G+ +G + L A++ L+
Sbjct: 194 VKAWLDGLGL--SRYAPVFEIHEVDDEVLPLLTLEDLKDMGIGAVGSRRKLYAAIQKLQ 250
>09_06_0199 +
21526872-21527250,21527431-21527594,21527673-21527736,
21528001-21528134,21528302-21528385,21528526-21528600,
21528683-21528754,21528852-21528925,21529185-21529282,
21529355-21529464,21529794-21529862,21529944-21530018,
21530519-21530611,21530690-21530769,21530877-21530976,
21531150-21531586,21531676-21531706,21532873-21533822,
21533982-21534201
Length = 1102
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 342 FLTHLAKTVKKYPSIRNMQIFYILNVYKSHNKLSI 446
F T L KT + YP + NM F++ + K N + +
Sbjct: 533 FHTSLDKTRRFYPHVNNMDGFFVAKLKKLSNTIPV 567
>08_02_0778 +
21119812-21119941,21120030-21120463,21120576-21120695,
21121356-21121898,21121988-21122172,21122255-21122425,
21122505-21122805
Length = 627
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -1
Query: 301 KFLRCSTASSKSSWCPMICMPKYSKSSHLNINNL--VPFKPLARICGTYWAPHASSPDIH 128
K++ C+ + + W ++ +PK+S+ ++LN N F + + W P+ H
Sbjct: 519 KYIMCAH-NQERHWILLVIVPKWSRVTYLNSNKSKDYDFIEITKALNMAWGPYVEKGGRH 577
>06_01_0956 +
7374273-7374356,7374502-7374963,7375043-7375673,
7375806-7375875,7376208-7376508
Length = 515
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = -1
Query: 304 TKFLRCSTASSKSSWCPMICMPKYSKSSHLNINNL--VPFKPLARICGTYWAPHASSPDI 131
T L+C S W ++ +PK+S+ ++LN N F + + W P+
Sbjct: 408 TGLLKCY---SLQHWILLVIVPKWSRVTYLNSNKTKDYDFTEITKALNMVWGPYVEKGGR 464
Query: 130 H 128
H
Sbjct: 465 H 465
>05_07_0085 -
27591909-27592152,27592232-27592402,27592485-27592648,
27592775-27593317,27593399-27593860,27593939-27594672,
27594761-27594890
Length = 815
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -1
Query: 301 KFLRCSTASSKSSWCPMICMPKYSKSSHLNINNL--VPFKPLARICGTYWAPHASSPDIH 128
+++ C+ + + W ++ +PK+S+ ++LN N F + + W+P+ H
Sbjct: 726 EYIMCAH-NQERHWILLVIVPKWSRVTYLNSNKSKDYDFSEITKALNMAWSPYVEKGGRH 784
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,451,498
Number of Sequences: 37544
Number of extensions: 314419
Number of successful extensions: 731
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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