Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0590
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45206| Best HMM Match : SAM_2 (HMM E-Value=2.8e-05)                 42   5e-04
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.018
SB_28884| Best HMM Match : SAM_2 (HMM E-Value=1.4e-24)                 33   0.17 
SB_16056| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_30084| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_1550| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                  31   1.2  
SB_30884| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.8e-33)           31   1.2  
SB_57709| Best HMM Match : RVT_1 (HMM E-Value=0.00081)                 30   2.1  
SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_12248| Best HMM Match : ATP_bind_3 (HMM E-Value=6.4)                29   2.8  
SB_54304| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_43248| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   3.6  
SB_6418| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_49139| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_55386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  

>SB_45206| Best HMM Match : SAM_2 (HMM E-Value=2.8e-05)
          Length = 169

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
 Frame = +3

Query: 96  IAEWTADQVAEWMSGLDACGAQYVPQMRAKGLNGTRLLMLRCDDLE--YLGMHIIGHQEL 269
           +  WT + V++W++GL      Y  +    G+NG  L+ L   DLE   L M +  H+  
Sbjct: 60  VTSWTPEDVSKWVAGLGPWTKGYGQKFLDSGINGMVLVSLTETDLEDPPLEMKVAIHRRA 119

Query: 270 LLEAVEHLRN 299
           L++A+E ++N
Sbjct: 120 LIQALEGVKN 129


>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1929

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +3

Query: 96   IAEWTADQVAEWMSGLDACGAQYVPQMRAKGLNGTRLLMLRCDDLEYLGMHIIGHQELLL 275
            + EW+ D V  W+  L     QYV   R   + G  L  L   +++ LG+  +GH+  + 
Sbjct: 1858 LTEWSCDDVCSWLESLGF--HQYVETFRENDIQGCHLPELSKAEMKELGVKSLGHRMTME 1915

Query: 276  EAVEHLRNFVSS 311
             +V  L + + S
Sbjct: 1916 NSVAKLTHPLES 1927


>SB_28884| Best HMM Match : SAM_2 (HMM E-Value=1.4e-24)
          Length = 257

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 87  GLNIAEWTADQVAEWMSGLDACGAQYVPQMRAKGLNGTRLLM 212
           G ++  WT  +V EW+  +D   A+Y P +R  G++G  +++
Sbjct: 76  GADVLLWTNGRVMEWLRLVDL--AEYAPNLRGSGVHGALMIL 115


>SB_16056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 18/70 (25%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
 Frame = +3

Query: 90  LNIAEWTADQVAEWMSGLDACGAQYVPQMRAKGLNGTRLLMLRCDDL-EYLGMHIIGHQE 266
           L +++W++++V  W+  +   G  Y   +    ++G  LL+L  +DL + LG+ ++G ++
Sbjct: 7   LPVSQWSSEEVGLWLENI-GYGDYYKEFVNDNRIDGQVLLILTENDLKDSLGIRVLGDRK 65

Query: 267 LLLEAVEHLR 296
            L  A+  L+
Sbjct: 66  RLWLAINKLQ 75


>SB_30084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +3

Query: 99  AEWTADQVAEWMSGLDACGAQYVPQMRAKGLNGTRLLMLR 218
           A+W+ DQVA+++  L  C +++     A+ ++G  L++LR
Sbjct: 60  AKWSIDQVADFIRSLQGC-SEHADSFIAEEIDGQALMLLR 98


>SB_1550| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 931

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +3

Query: 120  VAEWMSGLDACGAQYVPQMRAKG-LNGTRLLMLRCDDLEYLGMHIIGHQELLLEAVEHL 293
            V EW+  ++    +Y     + G ++  R+  L  DDL  +G+++IGH+  + ++++H+
Sbjct: 864  VEEWLENINM--GRYADAFVSSGYVDIDRIRHLEDDDLLKMGINLIGHRNKIRKSIKHI 920


>SB_30884| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.8e-33)
          Length = 308

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
 Frame = +3

Query: 63  CAVLITMAGLNIAEWT----ADQVAEWMSGLDACGAQYVPQMRAKG-LNGTRLLMLRCDD 227
           C  LIT    + AE T       V EW+  ++    +Y       G ++   +  L  DD
Sbjct: 218 CLGLITYFSFSRAEATNIAMVKSVEEWLENINM--GRYADAFVGSGYVDIDHIRHLEDDD 275

Query: 228 LEYLGMHIIGHQELLLEAVEHL 293
           L  +G+++IGH+  + ++++H+
Sbjct: 276 LLKIGINLIGHRNKIRKSIKHI 297


>SB_57709| Best HMM Match : RVT_1 (HMM E-Value=0.00081)
          Length = 754

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -1

Query: 592 LILTNFQSYN*QIFNLLT*Y*AKNNVLLPPNKC*LMSLSVVN-RSCH 455
           ++L N  S    I N +  Y  KNN+ L P+KC  MS+S +N  SC+
Sbjct: 467 VVLRNSPSLLGHIVNDIQAYALKNNMRLNPSKCKEMSVSFLNYDSCN 513


>SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 770

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 264 ELLLEAVEHLRNFVSSIR*NYR*KPLFLTHLAKTVKKYPSIRNMQI 401
           +++ E  E  RN   S+   YR  PL + H +K V +YP I +  +
Sbjct: 306 KIIEEYYEIDRNLPPSVT-RYRHSPLLVNHYSKLVNRYPKINSSSL 350


>SB_12248| Best HMM Match : ATP_bind_3 (HMM E-Value=6.4)
          Length = 172

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -1

Query: 181 ARICGTYWAPHASSPDIHSATWSAVHSAIFNPAIVISTA 65
           AR    +W P     D  S +W  V++ +  P  ++S A
Sbjct: 126 ARFYSKFWCPGCEGVDAFSTSWEGVNNYLVPPVYLVSRA 164


>SB_54304| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 614

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 181 ARICGTYWAPHASSPDIHSATWSAVHSAIFNPAIVISTA 65
           AR+   +W P     D  S +W  V++ +  P  ++S A
Sbjct: 441 ARLYSKFWCPGWEGVDAFSTSWEGVNNYLVPPVYLVSRA 479


>SB_43248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 871

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 322 FYLIELTKFLRCSTASSKSSWCPMICMPKYSKSSHL 215
           FY  E  +  R + A    SWC ++C P + +  HL
Sbjct: 834 FYSTERERHTRLAIAGRSLSWCSLLC-PLHPRQGHL 868


>SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 792

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 120 VAEWMSGLDACGAQYVPQMRAKG-LNGTRLLMLRCDDLEYLGMHIIGHQELLLEAVE 287
           + EW+  ++    +YV     +G +N  ++  L  DDL  LG+ +IGH+  + ++++
Sbjct: 723 IEEWLESINM--GRYVNTFSNQGYMNLDQVRRLEEDDLSRLGIKLIGHRNKISKSIK 777


>SB_6418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/68 (22%), Positives = 33/68 (48%)
 Frame = -1

Query: 226 SSHLNINNLVPFKPLARICGTYWAPHASSPDIHSATWSAVHSAIFNPAIVISTAHISTD* 47
           +SHL++    P    + +  T   PH ++ D+H  T S +H    +  +  S  H++T  
Sbjct: 26  TSHLHVTTSHPHVTTSHLHVTTSHPHVTTSDLH-VTTSHLHVTTSHLHVTTSHLHVTTSH 84

Query: 46  IYFLFYYE 23
           ++   +++
Sbjct: 85  LHVTTFHK 92


>SB_49139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 772

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 226 SSHLNINNLVPFKPLARICGTYWAPHASSPDIHSATWSAV 107
           S HL+  NLV   P +   GT+W    ++P  HS+ +S V
Sbjct: 40  SKHLDKANLVMSPPTSTFTGTHW---DATPQSHSSVFSPV 76


>SB_55386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 120 VAEWMSGLDACGAQYVPQMRAKG-LNGTRLLMLRCDDLEYLGMHIIGHQELLLEAVEHL 293
           V EW+  ++    +Y       G ++   +  L  DDL  +G+++IGH+  + ++++H+
Sbjct: 359 VEEWLENINM--GRYADAFVGSGYVDIDHIRNLEDDDLLKMGINLIGHRNKIRKSIKHI 415


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,658,354
Number of Sequences: 59808
Number of extensions: 387817
Number of successful extensions: 723
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)