Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0590
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00360.1 68417.m00050 cytochrome P450, putative                     28   5.2  
At5g05390.1 68418.m00581 laccase, putative / diphenol oxidase, p...    27   9.1  
At3g08010.1 68416.m00978 expressed protein                             27   9.1  

>At4g00360.1 68417.m00050 cytochrome P450, putative 
          Length = 553

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 57  EICAVLITMAGLNIAEWTAD 116
           EIC+VLI   G +++ WTA+
Sbjct: 336 EICSVLIETRGTDVSSWTAE 355


>At5g05390.1 68418.m00581 laccase, putative / diphenol oxidase,
           putative similar to laccase [Populus balsamifera subsp.
           trichocarpa][GI:3805960]
          Length = 565

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 138 GLDACGAQYVPQMRAKGLNGTR 203
           GLD C  ++ P+ R +GLNGTR
Sbjct: 360 GLDNCPKKF-PKSRCQGLNGTR 380


>At3g08010.1 68416.m00978 expressed protein
          Length = 374

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 87  GLNIAEWTADQVAEWMSGLDACGAQ 161
           GL++A   A  +A WM+GL+ C  +
Sbjct: 276 GLSVATSRAKPLAAWMNGLEVCSIE 300


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,839,021
Number of Sequences: 28952
Number of extensions: 270243
Number of successful extensions: 472
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)