Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0588
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha...    26   3.7  
SPACUNK4.19 |mug153||sequence orphan|Schizosaccharomyces pombe|c...    26   3.7  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    26   3.7  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      25   8.6  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   8.6  

>SPAC19D5.02c |||peroxisomal membrane protein Pex22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 297 RPERSQKPKQMEADGTKSHEGPS 229
           RP + QK KQ    G+K+ E P+
Sbjct: 155 RPSKPQKEKQGNKQGSKTEESPN 177


>SPACUNK4.19 |mug153||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 109

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 222 VSLMALRGSLYHQLPFASVFGFSQGVCNRVQ*AQLSDPTNSL 347
           V+  A +G    Q    S F F  G+C++V+  +L    NSL
Sbjct: 58  VNKQAEQGKEQQQYAMKSQFQFRSGICSKVRSDELGFKGNSL 99


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 294 PERSQKPKQMEADGTKSHEGPSGTRPSAM 208
           PE  +  K ++ D  +S E P  TRP A+
Sbjct: 420 PEELENMKYLQIDTPESKEYPRSTRPRAL 448


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 164 VSFEGRV*LEVLITRCSMPPHDFLSLAVLI 75
           VS +GRV +EV I +  + P D +S+ V I
Sbjct: 285 VSSDGRVVVEVSIPKLCIGPSDLVSVFVSI 314


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 475 PPSSFFLSIAFIYIYIYRRPPDNLERLIVAG 383
           PP+   L+   +Y+ ++RRP D L   I  G
Sbjct: 500 PPTFAILTNTGVYVVVHRRPIDVLASAIRMG 530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,086,532
Number of Sequences: 5004
Number of extensions: 41039
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)