Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0588
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0921 + 7753744-7753821,7753921-7754856,7755285-7755377,775... 32 0.30
12_02_1057 + 25733376-25735439 31 0.40
06_03_0819 - 24977204-24977290,24977372-24977746,24977823-249781... 30 0.93
12_02_1060 - 25752181-25754229 29 2.1
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 2.8
01_07_0210 + 42010460-42010553,42010660-42010851,42011353-42011678 29 2.8
12_02_1051 + 25696499-25696888 28 5.0
02_05_0339 - 28094581-28094817,28095011-28096381,28097713-280979... 28 5.0
06_01_1019 - 7971606-7972077,7972550-7972752 27 6.5
06_01_0755 + 5648872-5649471,5650092-5650453,5650576-5650619,565... 27 8.7
01_06_0593 - 30468654-30469109 27 8.7
01_01_0153 - 1352982-1353731 27 8.7
>07_01_0921 +
7753744-7753821,7753921-7754856,7755285-7755377,
7755462-7755815
Length = 486
Score = 31.9 bits (69), Expect = 0.30
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -2
Query: 435 YIYIGGHQTTLKD*--LWQGKVEGKRPAGRPPNCWSDQITALIGLCCKRPERSQKPKQME 262
++ +G TL+D LW + G+ G+ W D I L+G+ + QK ++ E
Sbjct: 86 HLPVGEMTITLQDVSCLWGLPIHGRPITGQADGSWVDMIERLLGIPMEEQHMKQKKRKKE 145
Query: 261 ADGT 250
D T
Sbjct: 146 DDMT 149
>12_02_1057 + 25733376-25735439
Length = 687
Score = 31.5 bits (68), Expect = 0.40
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 318 LIGLCCKRPERSQKPKQMEADGTKSHEGPSGTRPSAMKYST 196
++GL C P+RS +P +A G E P + P+ M +T
Sbjct: 607 VVGLWCAHPDRSLRPTIRQAVGVLRGEAPPPSLPARMPVAT 647
>06_03_0819 -
24977204-24977290,24977372-24977746,24977823-24978199,
24978456-24978770,24978861-24979296,24979386-24979463
Length = 555
Score = 30.3 bits (65), Expect = 0.93
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -2
Query: 435 YIYIGGHQTTLKD*--LWQGKVEGKRPAGRPPNCWSDQITALIGLCCKRPERSQKPKQME 262
++ IG TL+D LW + GK G+ WSD I +G+ + E +K ++ E
Sbjct: 86 HLPIGEMTITLQDISCLWGLPISGKLIVGQYDGNWSDMIERYLGIPPEDQEMKKKKRKKE 145
Query: 261 AD 256
D
Sbjct: 146 DD 147
>12_02_1060 - 25752181-25754229
Length = 682
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 318 LIGLCCKRPERSQKPKQMEADGTKSHEGPSGTRPSAMKYST 196
++GL C P+RS +P +A E P + P+ M +T
Sbjct: 605 IVGLWCAHPDRSVRPVIRQAVSVLRGEAPPPSLPARMPVAT 645
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 318 LIGLCCKRPERSQKPKQMEADGTKSHEGPSGTRPSAMKYST 196
++GL C P+RS +P +A E P + P+ M +T
Sbjct: 705 VVGLWCAHPDRSVRPVIRQAISVLRGEAPPPSLPARMPVAT 745
>01_07_0210 + 42010460-42010553,42010660-42010851,42011353-42011678
Length = 203
Score = 28.7 bits (61), Expect = 2.8
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -2
Query: 354 RPPNCWSDQITALI 313
RPPNCW+D+ A++
Sbjct: 107 RPPNCWADRAAAIV 120
>12_02_1051 + 25696499-25696888
Length = 129
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 318 LIGLCCKRPERSQKPKQMEADGTKSHEGPSGTRPSAMKYST 196
++GL C P+RS +P +A E P + P+ M +T
Sbjct: 51 VVGLWCAHPDRSLRPTIRQAVSVLRGEVPPPSLPTRMPVAT 91
>02_05_0339 -
28094581-28094817,28095011-28096381,28097713-28097922,
28098047-28098283,28098677-28099041,28099661-28099970
Length = 909
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -2
Query: 393 LWQGKVEGKRPAGRPPNCWSDQITALIGLCCKRPERSQKPKQMEAD 256
LW ++G+ G+ W D+I L+G+ + QK ++ + D
Sbjct: 450 LWGLPIQGEPIIGKLEGPWVDEIETLLGVTPGKQVMKQKKRKADGD 495
>06_01_1019 - 7971606-7972077,7972550-7972752
Length = 224
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 441 YIYIYIGGHQTTLKD*LWQGKVEGK 367
Y+ ++GG Q + D W+ KVE K
Sbjct: 154 YMIQFVGGVQDNMSDFFWKAKVENK 178
>06_01_0755 +
5648872-5649471,5650092-5650453,5650576-5650619,
5651324-5651538,5651643-5651767,5651862-5651931
Length = 471
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 164 PTQKKRLFFFLVEYFIAEGRVPDGPSWLFVPSASICFGFWLLSGRLQQSPMS 319
P ++ F ++E ++ GR+ GP W V + F L G +Q P+S
Sbjct: 4 PARRSTRFCLVIEEVVSPGRLGRGPPWAAV-GLRLKKVFKLELGSIQAEPIS 54
>01_06_0593 - 30468654-30469109
Length = 151
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -2
Query: 297 RPERSQKPKQMEADGTKSHEGPSGTR 220
+PE P+ E DG HE P G R
Sbjct: 46 QPEERDSPEIHEKDGDCGHEDPGGVR 71
>01_01_0153 - 1352982-1353731
Length = 249
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = -2
Query: 351 PPNC-WSDQITALIGLC--CKRPERSQKPKQMEADGTKSHEGP 232
PP C D++ C C+R E S+ P+ + D H GP
Sbjct: 199 PPTCRCMDEVKECADACKDCQRVESSEPPRYVCKDRFTGHPGP 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,055,322
Number of Sequences: 37544
Number of extensions: 318536
Number of successful extensions: 901
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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