Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0588
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56505| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_39726| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  

>SB_56505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 959

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -2

Query: 303 CKRPERSQKPKQMEADGTKSHEGPSGTRPSAMKYSTKKKNS 181
           CK P + Q+  + +A G   H         + K  T KKN+
Sbjct: 485 CKEPGKVQEGLKGQAPGNSHHRSEKHVEAQSPKQKTSKKNN 525


>SB_39726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 520

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 5/26 (19%)
 Frame = +2

Query: 224 VPDG-PSW----LFVPSASICFGFWL 286
           +PD  PSW    +FV S SIC+G W+
Sbjct: 215 IPDSDPSWGIDIVFVKSTSICYGPWV 240


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,402,168
Number of Sequences: 59808
Number of extensions: 342959
Number of successful extensions: 942
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)