Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0588
(508 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY255666-1|AAQ96603.1| 164|Caenorhabditis elegans MPS-3 protein. 29 2.6
AF099925-5|AAZ94292.1| 164|Caenorhabditis elegans Mirp k channe... 29 2.6
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 4.5
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 28 4.5
AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical ... 28 4.5
Z99283-1|CAB16536.2| 414|Caenorhabditis elegans Hypothetical pr... 27 5.9
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 27 7.8
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 27 7.8
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 27 7.8
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 27 7.8
>AY255666-1|AAQ96603.1| 164|Caenorhabditis elegans MPS-3 protein.
Length = 164
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 472 PSSFFLSIAFIYIYIYRRP 416
P FFL IA+I +YIY+ P
Sbjct: 6 PILFFLCIAYILLYIYKHP 24
>AF099925-5|AAZ94292.1| 164|Caenorhabditis elegans Mirp k channel
accessory subunitprotein 2, isoform d protein.
Length = 164
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 472 PSSFFLSIAFIYIYIYRRP 416
P FFL IA+I +YIY+ P
Sbjct: 6 PILFFLCIAYILLYIYKHP 24
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 24 STRWSDLVKTLTGNNRGYKNRQGQKVMGWHRASSDQHFKLD 146
+ +W DL K + N+G + RQ G R D H KLD
Sbjct: 1433 NAQWGDLKKQVW--NKGLRLRQAADQKGLDRILEDAHAKLD 1471
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 24 STRWSDLVKTLTGNNRGYKNRQGQKVMGWHRASSDQHFKLD 146
+ +W DL K + N+G + RQ G R D H KLD
Sbjct: 1433 NAQWGDLKKQVW--NKGLRLRQAADQKGLDRILEDAHAKLD 1471
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 24 STRWSDLVKTLTGNNRGYKNRQGQKVMGWHRASSDQHFKLD 146
+ +W DL K + N+G + RQ G R D H KLD
Sbjct: 1433 NAQWGDLKKQVW--NKGLRLRQAADQKGLDRILEDAHAKLD 1471
>AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical
protein Y51F10.8 protein.
Length = 204
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -2
Query: 420 GHQTTLKD*LWQGKVEGKRPAGRPPNCWSDQI 325
G TTL + W + E KRP GRPP W+D +
Sbjct: 135 GRWTTLMND-WCPRDE-KRPVGRPPMRWNDSL 164
>Z99283-1|CAB16536.2| 414|Caenorhabditis elegans Hypothetical
protein Y70C5C.2 protein.
Length = 414
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -2
Query: 312 GLCCKRPERSQKPKQMEADGTKSHEGPSGTRPSAMKYST 196
G CKRP Q P+ T + PSG + M + T
Sbjct: 273 GYLCKRPAGVQCPQYPPVTVTPAPSNPSGCNSTIMSFGT 311
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 27.1 bits (57), Expect = 7.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 369 KRPAGRPPNCWSDQI 325
KRP GRPP W+D +
Sbjct: 839 KRPVGRPPMRWTDSL 853
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 27.1 bits (57), Expect = 7.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 369 KRPAGRPPNCWSDQI 325
KRP GRPP W+D +
Sbjct: 1014 KRPVGRPPMRWTDSL 1028
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 27.1 bits (57), Expect = 7.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 369 KRPAGRPPNCWSDQI 325
KRP GRPP W+D +
Sbjct: 753 KRPVGRPPMRWTDSL 767
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 27.1 bits (57), Expect = 7.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 369 KRPAGRPPNCWSDQI 325
KRP GRPP W+D +
Sbjct: 365 KRPVGRPPMRWTDSL 379
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,924,624
Number of Sequences: 27780
Number of extensions: 242035
Number of successful extensions: 579
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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