Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0588
         (508 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21930.1 68417.m03172 expressed protein contains Pfam profile...    27   5.5  
At3g04650.1 68416.m00498 expressed protein                             27   5.5  
At4g16070.1 68417.m02437 lipase class 3 family protein low simil...    27   9.6  
At3g54320.1 68416.m06003 ovule development protein, putative sim...    27   9.6  
At1g53910.1 68414.m06137 AP2 domain-containing protein RAP2.12 (...    27   9.6  

>At4g21930.1 68417.m03172 expressed protein contains Pfam profile
           PF04520: Protein of unknown function, DUF584
          Length = 183

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 60  GNNRGYKNRQGQKVMGWHRASSDQHFKLDTTFERDRLRRRGYS 188
           G  R     + ++ +G H+ S D H   +TTFE + +    +S
Sbjct: 2   GKGRSLPISRSERFLGSHQQSDDHHVDGETTFELELMEEDVWS 44


>At3g04650.1 68416.m00498 expressed protein
          Length = 486

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 390 WQGKVEGKRPAGR-PPNCWSDQITALIGLCCKRPERS 283
           W G    K   GR PP+CW+   TA  G   K P+ +
Sbjct: 313 WMGNNSAKLGNGRTPPHCWTFFSTAAYGKQNKVPQEN 349


>At4g16070.1 68417.m02437 lipase class 3 family protein low
           similarity to calmodulin-binding heat-shock protein
           CaMBP [Nicotiana tabacum] GI:1087073; contains Pfam
           profile PF01764: Lipase, PF03893: Lipase 3 N-terminal
           region
          Length = 654

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 49  RRSQVITEAIRTAKDRKSWGGIEHRVISTSS*TRPSKETDSEEEAILLFSRIL 207
           RRS     A   A DRK     EH   S+S   R   + + EEE ++   +++
Sbjct: 441 RRSTEALLAETVAIDRKGHKRTEHSSSSSSESDRDEPDEEEEEEPLISIDQVI 493


>At3g54320.1 68416.m06003 ovule development protein, putative
           similar to ovule development protein aintegumenta
           (GI:1209099) [Arabidopsis thaliana]
          Length = 427

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 297 RPERSQKPKQMEADGTKSHE--GPSGTRPSAM 208
           RP+R+++ K+    G KSH    P+ TR S++
Sbjct: 34  RPKRAKRAKKSSPSGDKSHNPTSPASTRRSSI 65


>At1g53910.1 68414.m06137 AP2 domain-containing protein RAP2.12
           (RAP2.12) identical to AP2 domain containing protein
           GI:2281649 from [Arabidopsis thaliana]
          Length = 358

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +3

Query: 3   RSSHGRSSTRWSDLVKTLTGNNRGYKNRQGQKVMGWHRASSDQHFKLDTTFERD 164
           RS    S   W DL K L G+ +  KNR           +  Q FK D++ + D
Sbjct: 15  RSRRVTSEFIWPDLKKNLKGSKKSSKNRSNFFDFDAEFEADFQGFKDDSSIDCD 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,439,309
Number of Sequences: 28952
Number of extensions: 237143
Number of successful extensions: 662
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)