Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0587
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   7.6  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    25   7.6  
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar...    25   10.0 

>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 642 ILRLSWNWRIRCWWIIGPGHYKSSWHRSSRYVYR 541
           ILR+S   + + ++I+  G+Y   W     YV R
Sbjct: 529 ILRMSQQLKNKIYYILSKGNYFVDWSICDEYVKR 562


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -2

Query: 384 LQH*IHSWDTFL-NKNVSFEKVSKLPIELEMF 292
           LQH I  WD FL +K+++  + S+  ++L++F
Sbjct: 198 LQHGIRIWDNFLSSKSINSFESSESQMQLKIF 229


>SPCC970.06 |||cargo receptor for soluble proteins
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 539 ILYTYLEDLCQLDL*WPGPIIHQHRILQFQLNLKMTLLITC 661
           I+ TY ED  ++   WP  + +     +F+      LL  C
Sbjct: 62  IVATYFEDAIRIVTQWPEQVSYMRDYRRFRFGTAPLLLFVC 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,199
Number of Sequences: 5004
Number of extensions: 46056
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)