Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0587
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35010.1 68418.m04132 hypothetical protein similar to At3g243...    29   3.8  
At3g24380.1 68416.m03061 hypothetical protein similar to At5g368...    27   8.7  
At2g14774.1 68415.m01671 hypothetical protein                          27   8.7  
At1g34730.1 68414.m04317 hypothetical protein similar to At3g243...    27   8.7  

>At5g35010.1 68418.m04132 hypothetical protein similar to At3g24380,
           At5g36840, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790
          Length = 230

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 666 HPHVISKVILRLSWNWRIRCWWIIGPGHYKSSWHRSSRYVYRID 535
           +P++   ++ R++     +CWW +GP     S  R    VYR D
Sbjct: 3   NPNIPDDLLARIAKKMADKCWWYLGP--MLKSGPRGRDIVYRPD 44


>At3g24380.1 68416.m03061 hypothetical protein similar to At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790
          Length = 230

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 666 HPHVISKVILRLSWNWRIRCWWIIGPGHYKSSWHRSSRYVYRID 535
           +P++   ++ +++     +CWW +GP     S  R    VYR D
Sbjct: 3   NPNIPDDLLAKIAKKMADKCWWYLGP--MLKSGPRGRDIVYRPD 44


>At2g14774.1 68415.m01671 hypothetical protein
          Length = 230

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 666 HPHVISKVILRLSWNWRIRCWWIIGPGHYKSSWHRSSRYVYRID 535
           +P++   ++ +++     +CWW +GP     S  R    VYR D
Sbjct: 3   NPNIPDDLLAKIAKKMAEKCWWYLGP--MLKSGPRGRDIVYRPD 44


>At1g34730.1 68414.m04317 hypothetical protein similar to At3g24380,
           At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
           At3g43390, At2g05560, At4g08880, At1g27790
          Length = 163

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 666 HPHVISKVILRLSWNWRIRCWWIIGPGHYKSSWHRSSRYVYRID 535
           +P++   ++ +++     +CWW +GP     S  R    VYR D
Sbjct: 3   NPNIPDDLLAKIAKKMADKCWWYLGP--MLKSGPRGRDIVYRPD 44


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,832,555
Number of Sequences: 28952
Number of extensions: 234230
Number of successful extensions: 445
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)