BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0585 (430 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M... 26 2.9 SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa... 26 2.9 SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 5.0 SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 24 8.7 >SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||Manual Length = 325 Score = 25.8 bits (54), Expect = 2.9 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = -1 Query: 139 IC*SFVLCLVNLLIICSVSCCRNIELFLVLFRLIFYIQ 26 +C F L+ +L ICS+ C + FLV F L I+ Sbjct: 1 MCPLFKTYLLYILKICSIPCLAYVVNFLVCFVLFTNIK 38 >SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosaccharomyces pombe|chr 1|||Manual Length = 407 Score = 25.8 bits (54), Expect = 2.9 Identities = 10/28 (35%), Positives = 15/28 (53%) Frame = -3 Query: 233 ALSQVTPGCCAGSPPQSLVLIARFSHYC 150 A + +T C SPP +LV+ H+C Sbjct: 270 AATDLTLNCLKSSPPNALVIALCCHHHC 297 >SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 2670 Score = 25.0 bits (52), Expect = 5.0 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +3 Query: 48 NNTRNSSILRQHDTLQIINKLTRHKTND*QIYENTIMRETGDQYEALW 191 N+ R S L D I+ KL+ K ND I+ + I + D LW Sbjct: 525 NSERISHTLELQD---ILVKLSTPKNNDVFIFSSKITNKLNDDQSKLW 569 >SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp9|Schizosaccharomyces pombe|chr 3|||Manual Length = 610 Score = 24.2 bits (50), Expect = 8.7 Identities = 8/13 (61%), Positives = 11/13 (84%) Frame = +1 Query: 70 YYDNTIHYRLLTN 108 YYDNTI +R++ N Sbjct: 490 YYDNTIFHRIIKN 502 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,840,042 Number of Sequences: 5004 Number of extensions: 36070 Number of successful extensions: 71 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 71 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 154448264 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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