Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0585
         (430 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)                       32   0.23 
SB_36566| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.71 
SB_49559| Best HMM Match : Ion_trans_2 (HMM E-Value=0.013)             29   1.2  
SB_21233| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_18991| Best HMM Match : RVT_1 (HMM E-Value=2.8e-34)                 27   6.6  
SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.6  
SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)
          Length = 521

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 166 VSLIIVFSYIC*SFVLCLVNLLIICSVSCCRNIELFLVLFRLI 38
           VSL I+       FVLC  +    C+V+CC    LF VL+ ++
Sbjct: 93  VSLYILRVMFVSLFVLCTCHRACSCNVACCVRAMLFFVLYCIV 135


>SB_36566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1653

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +3

Query: 327 YM*IDSKGVNSKKKSVCVRSDARLEFTGYK 416
           Y   D+KG+N  +++V V+ DA+++  GY+
Sbjct: 714 YNHFDTKGLNENRETVSVKVDAKIDVKGYE 743


>SB_49559| Best HMM Match : Ion_trans_2 (HMM E-Value=0.013)
          Length = 201

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 166 VSLIIVFSYIC*SFVL-CLVNLLIICSVSCCRNI 68
           V + + F Y     VL CLVNLL++CS    RN+
Sbjct: 131 VGVFLAFPYFTGFCVLACLVNLLVLCSEKGYRNV 164


>SB_21233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -1

Query: 169 PVSLIIVFSYIC*SFVLCLVNLLIICSVS 83
           P+ LII+F +I    V+  +N++ IC+VS
Sbjct: 7   PLLLIIIFIFIAIIVVVSAINIICICTVS 35


>SB_18991| Best HMM Match : RVT_1 (HMM E-Value=2.8e-34)
          Length = 899

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 220 TCDNAFRVTCAIRRITHFV-*HASTILVPIIFIPRAYICKSIL 345
           TC +AF     IRRI  F+   A+  LV  + I R   C S+L
Sbjct: 556 TCQSAFYSIFNIRRIRKFISKDAAKTLVQALVISRLDYCNSLL 598


>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1068

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -1

Query: 142 YIC*SFVLCLVNLLIICS 89
           Y+C + V+CL+N+L+ C+
Sbjct: 871 YLCGNMVMCLLNMLLSCA 888


>SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 57   RNSSILRQHDTLQIINKLTRHKTN 128
            RNSSI RQH  L    +++ H+TN
Sbjct: 991  RNSSIERQHTRLPSRPRVSSHRTN 1014


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,742,535
Number of Sequences: 59808
Number of extensions: 271786
Number of successful extensions: 606
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)