Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0585
         (430 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37450.1 68418.m04507 leucine-rich repeat transmembrane prote...    28   3.1  
At4g10370.1 68417.m01702 DC1 domain-containing protein contains ...    28   3.1  
At5g06040.1 68418.m00669 self-incompatibility protein-related          27   7.1  
At5g06030.1 68418.m00668 self-incompatibility protein-related si...    27   7.1  
At4g23920.1 68417.m03440 UDP-glucose 4-epimerase, putative / UDP...    27   7.1  
At1g79250.1 68414.m09239 protein kinase, putative similar to vir...    27   7.1  
At5g52580.1 68418.m06529 hypothetical protein                          26   9.4  

>At5g37450.1 68418.m04507 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 935

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 387 RSGHTHFFFWSLLL*NRFTYIGPGYE 310
           + G+TH F+ SL +   F Y+ P YE
Sbjct: 498 KDGNTHIFYSSLCIKRVFIYVTPVYE 523


>At4g10370.1 68417.m01702 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 687

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 217 VTCDNAFRVTCAIRRITHFV*HASTILVPIIFIP 318
           +TC+ +    CA+R++  F+ H  +   P+ F P
Sbjct: 201 LTCNLSMHPVCAMRKVPFFIDHPKSHPHPLTFFP 234


>At5g06040.1 68418.m00669 self-incompatibility protein-related 
          Length = 111

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -1

Query: 163 SLIIVFSYIC*SFVLCLVNLLIICSVS 83
           S+I + SY+C  F++ +V + +ICS++
Sbjct: 5   SIINLNSYVCSIFIMSIVVISLICSLA 31


>At5g06030.1 68418.m00668 self-incompatibility protein-related
           simlar to self-incompatibility [Papaver rhoeas]
           GI:3097260
          Length = 150

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 163 SLIIVFSYIC*SFVLCLVNLLIICS 89
           S I ++SY+C  F++ +V + +ICS
Sbjct: 5   SKINLYSYVCSIFIMSIVVISLICS 29


>At4g23920.1 68417.m03440 UDP-glucose 4-epimerase, putative /
           UDP-galactose 4-epimerase, putative / Galactowaldenase,
           putative similar to UDP-galactose 4-epimerase from
           Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
           GI:3021357 [AJ005082]
          Length = 350

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 10  ARLEFTGYKKLNETIREIVLYYDNTI 87
           A + F G K + E++ + +LYY+N I
Sbjct: 81  AVIHFAGLKAVGESVEKPLLYYNNNI 106


>At1g79250.1 68414.m09239 protein kinase, putative similar to viroid
           symptom modulation protein/dual-specificity protein
           kinase [Lycopersicon esculentum] gi|7672777|gb|AAF66637
          Length = 555

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -2

Query: 237 KCVIAGDAGLLRRQSATK--PRTDRPFLSLLYFHIFVSRLFCV 115
           K  +A    LLR Q+  +   + D PFL  LY H    + +C+
Sbjct: 179 KASLASRNKLLRAQTEREILSQLDHPFLPTLYSHFETDKFYCL 221


>At5g52580.1 68418.m06529 hypothetical protein 
          Length = 327

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 169 PVSLIIVFSYIC*SFVLCLVNLLIICSVSCCRNI 68
           P+ + I+F  I  S  + +  +L+ C  SC RNI
Sbjct: 296 PLEVTIIFFVI--SITMLVETILVYCEPSCVRNI 327


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,397,545
Number of Sequences: 28952
Number of extensions: 181463
Number of successful extensions: 439
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)