Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0584
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    29   0.94 
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   2.9  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   3.8  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    27   3.8  
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    25   8.7  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    25   8.7  

>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = +2

Query: 539 SRSLTFQYNINDNKNRE*ITHGYPAPNYDSPSPANQILT 655
           SRS  F +++N++KNR+ +T  +P    D  +  +Q+L+
Sbjct: 123 SRSQLFNHSLNESKNRD-LTEQHPFVTLDELNSNDQVLS 160


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +1

Query: 148  HNY-WWDG-LCARTGRYHHPDYFFREAMC 228
            +NY WWDG    R G  + P  F RE MC
Sbjct: 1673 NNYSWWDGHWFGRKGIPYMPIQFIREFMC 1701


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -3

Query: 304 SLRGRRPPSMRSKSQVQLPAIPRDR 230
           SL  R  PS+RS S    PA PR R
Sbjct: 88  SLLNRNSPSLRSLSPPATPATPRSR 112


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 8/42 (19%), Positives = 26/42 (61%)
 Frame = +2

Query: 599 HGYPAPNYDSPSPANQILTYTFNYLPNYLDNRYPNKAQTNLI 724
           + + + N  +P  +N+   ++ N+LP   ++++ ++ +TN++
Sbjct: 213 YAFSSLNTSAPPLSNKEYAFSVNHLPAINEHKWKSRVETNML 254


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 54  KLMRSSIMFVNIFHDQGITSCKQI 125
           +L R+SI  +N FH + ITS + +
Sbjct: 216 RLKRNSIFLINSFHSKVITSIQDL 239


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +2

Query: 608 PAPNYDSPSPANQILTYTFNYL--PNYLDNRYPNKAQTNL 721
           P P YDS SPA   L     +L   +Y D  Y N   + L
Sbjct: 181 PTPKYDSNSPAGHELRKRMTHLLYESYKDLGYSNAESSML 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,515
Number of Sequences: 5004
Number of extensions: 62966
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)