Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0584
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0272 - 27348537-27348728,27349035-27349192,27349292-273493...    29   3.0  
09_02_0010 - 2940063-2940688,2940825-2941746,2941752-2941964           28   6.9  
06_01_0909 - 7011253-7012385,7014966-7015221                           28   6.9  
01_06_0945 + 33217310-33217427,33218820-33219433                       28   9.1  

>02_05_0272 - 27348537-27348728,27349035-27349192,27349292-27349323,
            27349420-27349514,27349614-27349687,27349800-27349878,
            27350015-27350078,27350156-27350218,27350300-27350442,
            27350566-27350703,27350792-27350913,27350993-27351158,
            27351276-27351398,27351609-27351680,27351773-27351880,
            27352481-27352597,27352727-27352865,27352974-27353080,
            27353167-27353276,27353892-27354025,27354106-27354255,
            27354329-27354549,27354647-27355318
          Length = 1092

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 235  DRNTLLRGRNSRGGGTYPCGRTTRPTSSYAN 143
            D  ++  G ++RGGG  P  R+T+P  + A+
Sbjct: 1000 DSGSMASGAHTRGGGPLPGARSTKPAGNVAD 1030


>09_02_0010 - 2940063-2940688,2940825-2941746,2941752-2941964
          Length = 586

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 188 GTTTPTISSAKQCVPVAWNSRQLYLGLRPHGG 283
           G T+    +  +C+P AW   Q Y+   PH G
Sbjct: 124 GRTSSFQQTRDECIPEAWERLQEYVSACPHHG 155


>06_01_0909 - 7011253-7012385,7014966-7015221
          Length = 462

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 176 PARVGTTTPTISSAKQCVPVAWNSRQLYLGLRPHGG 283
           PA    T PT+ ++K C     +   LY   RP GG
Sbjct: 113 PAYTAATCPTLPASKNCHKYGKDPGHLYWRWRPDGG 148


>01_06_0945 + 33217310-33217427,33218820-33219433
          Length = 243

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -3

Query: 307 TSLRGRRPP--SMR-SKSQVQLPAIPRDRNTLLRGRNSRGGGTYPCG 176
           T  RGRRPP  ++R + +Q + PA PR     L GR   GGG    G
Sbjct: 61  TPPRGRRPPPSNLRPAAAQHRSPASPR--LPTLPGRRGHGGGAASAG 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,756,426
Number of Sequences: 37544
Number of extensions: 412184
Number of successful extensions: 905
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)