Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0584
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_53080| Best HMM Match : DMAP_binding (HMM E-Value=8)                30   2.3  
SB_58795| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  

>SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1261

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +2

Query: 536 RSRSLTFQYNINDNKNRE*ITHGYPA-PNYDSPSPANQILTYTFNYLPNYLDNRYPNKAQ 712
           RS+S  +Q  +N    R  +       P  D P+PA   L+ T   +     +  PN  Q
Sbjct: 135 RSKSTDYQLEVNREHKRSLLLCSQDMKPKSDPPTPAGAFLSLTLASITKRSGSSMPNLTQ 194

Query: 713 TNLI 724
           ++LI
Sbjct: 195 SSLI 198


>SB_53080| Best HMM Match : DMAP_binding (HMM E-Value=8)
          Length = 114

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +2

Query: 608 PAPNYDSPSPANQILTYTFNY---LPNYLDNRYPNKAQTNL 721
           P    DSPS AN++  Y   Y   L  +L+   PNK QT +
Sbjct: 59  PLCTKDSPSTANELDIYVKEYNNTLAKFLNRHAPNKTQTRV 99


>SB_58795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = -3

Query: 373 LIASPGKLAQVYLMLRGHQSR*TSLRGRRPPSMRSKSQVQLPAIPRDRNTLLRGRNSRGG 194
           ++  PG+ + +Y +  G +SR  +++   PPS   KSQ   P  P       RG +SR G
Sbjct: 139 VLGHPGEKSSLYSLRDGTESRGRTMKMGAPPSTTPKSQG--PRTPAS-----RGSDSRKG 191

Query: 193 GTY 185
            T+
Sbjct: 192 RTH 194


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,910,243
Number of Sequences: 59808
Number of extensions: 474208
Number of successful extensions: 1087
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)