Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0584
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam ...    29   3.3  
At2g30010.1 68415.m03651 expressed protein                             29   4.4  
At2g16440.1 68415.m01883 DNA replication licensing factor, putat...    29   4.4  

>At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 1006

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 605 YPAPNYDSPSPANQILTYTFNYLPNYLDNRYPNKAQTNLIT 727
           YP+ NY + +PA+    YT +Y  N   N  P+ A T+  T
Sbjct: 197 YPSTNYSNQTPASNQGNYT-DYTSNPYQNYTPDAANTHSST 236


>At2g30010.1 68415.m03651 expressed protein
          Length = 398

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 229 NTLLRGRNSRGGGTYPCGRTTRPTSSYAN 143
           +T+ +G  S  G T P   TT PTSSY N
Sbjct: 294 STITQGGKSCYGQTTPFSGTTYPTSSYVN 322


>At2g16440.1 68415.m01883 DNA replication licensing factor, putative
           similar to SP|P49717 DNA replication licensing factor
           MCM4 (CDC21 homolog) {Mus musculus}, SP|P29458 Cdc21
           protein {Schizosaccharomyces pombe}; contains Pfam
           profile PF00493: MCM2/3/5 family
          Length = 847

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/53 (32%), Positives = 20/53 (37%)
 Frame = -3

Query: 349 AQVYLMLRGHQSR*TSLRGRRPPSMRSKSQVQLPAIPRDRNTLLRGRNSRGGG 191
           A ++   RG  S  T      PP  R  S    P   R      +GRN  GGG
Sbjct: 33  AALHRRRRGRSSTPTQFATPPPPPSRLASSNSTPPTSRPSAARSKGRNGHGGG 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,827,370
Number of Sequences: 28952
Number of extensions: 327490
Number of successful extensions: 698
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)