Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0583
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    29   0.81 
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    26   4.3  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    26   4.3  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    26   5.7  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    25   9.9  

>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 301 FSRGCLRRWLCSFFTYTGTGWKCSNLIDW*DLACSCSIXXWCPD 170
           FS+G ++  +   FTY+G G KC  ++D   L+       W  D
Sbjct: 139 FSKGLMKS-MTHLFTYSGMGAKCKKVLDKPSLSIKLIHPQWLLD 181


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 488 SVFQTSMLQTLFQTAVFKASVLKTS--RSNMVFNVVS 384
           SV   S+LQTLFQT +  A++      R  M FN+++
Sbjct: 46  SVKTNSLLQTLFQTPLPNANIWSNQAIRILMAFNILA 82


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 450 DRRVQSFRAQDQQKQYGVQCCVCRPRGQVHR 358
           +R+ ++FR +D+    G++C V R +   HR
Sbjct: 381 ERKEKAFRKKDEDSAAGLRCLVFRIKYLAHR 411


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 243 PVPVYVKKEHSHLLKHPLEKGKSEQNLKL 329
           P P+ +KK +S LLK     G   QN KL
Sbjct: 269 PEPLTIKKVYSTLLKIADSNGNGAQNRKL 297


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 72  GRYGTSSWSLDYCCTVLVEPRAEL 1
           G  G   + +D+CC++L+E R  +
Sbjct: 399 GFNGAYDFLMDFCCSILIELRESI 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,319,892
Number of Sequences: 5004
Number of extensions: 42199
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)