Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0583
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230...    31   0.84 
01_06_1827 + 40169001-40169263,40169358-40169472,40170090-401702...    29   2.6  
01_06_1282 + 35972234-35972244,35972451-35972522,35972714-359727...    29   4.5  
08_01_0107 - 789217-789984,790070-790219,790303-790890,790968-79...    28   7.8  
03_05_0488 - 24847076-24847220,24847823-24847872,24848139-248482...    28   7.8  

>01_06_1556 -
           38222071-38222708,38222795-38222822,38222950-38223070,
           38223206-38223318,38223424-38223506,38223868-38223930,
           38224100-38224254,38224411-38224580,38225101-38225189,
           38225304-38225496,38225655-38225779,38226069-38226475,
           38226855-38226919,38227414-38227692,38227772-38227845,
           38228241-38228292,38228366-38228473,38228871-38228972,
           38229100-38229173,38229262-38229435,38229667-38229771,
           38229867-38229977,38230364-38230487
          Length = 1150

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = -2

Query: 244 GWKCSNLIDW*DLACSCSIXXWCPDSPIKDWWSYFASTWGASSCIIPGKAVTAAMSPRKI 65
           G  CS LI   +  CS S   +C D P+++    +  +W  S+   P   VT  ++ +KI
Sbjct: 310 GIACSFLIKCKNSTCSRSFHTFCLDPPLQEIIGTWECSWCKSNA-APAVKVTEVLTSKKI 368

Query: 64  WYFILVARLL 35
              +   R+L
Sbjct: 369 QRLVGHRRIL 378


>01_06_1827 +
           40169001-40169263,40169358-40169472,40170090-40170201,
           40170556-40170623,40170798-40170852,40170948-40171027,
           40171811-40171924,40172178-40172296,40173064-40173181,
           40173264-40173394,40173535-40173688,40173922-40174017
          Length = 474

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = -2

Query: 388 CLSSSRTSPPPCLCSVSG*ISLRFCSDFPFSRGCLRRWLC 269
           C        PP L  V          DF FSRG LR W C
Sbjct: 92  CTHEVDLDKPPVLQEVENFFKGHGVGDFTFSRGRLREWRC 131


>01_06_1282 +
           35972234-35972244,35972451-35972522,35972714-35972747,
           35973247-35973360,35974833-35975036,35975290-35975449,
           35976093-35976240,35976345-35976422,35976854-35976938,
           35977142-35977213
          Length = 325

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 276 HLLKHPLEKGKSEQNLKLIHPETEHKHGGGLVLEDDRHNIEHHIASAGLE 425
           +LL++ + +  + +NL LI    +    GG+VLE D   I   ++  GLE
Sbjct: 245 YLLRNKVHRRAALENLDLIFLCLDEVVDGGIVLETDAKAILEKVSGHGLE 294


>08_01_0107 -
           789217-789984,790070-790219,790303-790890,790968-791093
          Length = 543

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/62 (25%), Positives = 24/62 (38%)
 Frame = +3

Query: 234 HFHPVPVYVKKEHSHLLKHPLEKGKSEQNLKLIHPETEHKHGGGLVLEDDRHNIEHHIAS 413
           H    P++    HS +   P  K +    ++   P  E   GGG       H+  HH +S
Sbjct: 370 HASSSPMHRAHHHSPVTPSP-SKARPPIQVRSASPRVERGGGGGGSYTPSLHSHRHHASS 428

Query: 414 AG 419
            G
Sbjct: 429 GG 430


>03_05_0488 - 24847076-24847220,24847823-24847872,24848139-24848278,
            24848358-24848493,24848584-24848683,24848837-24848949,
            24849034-24849132,24849227-24849311,24849799-24850037,
            24850202-24850372,24850544-24850784,24850899-24851172,
            24851481-24851660,24852170-24852251,24852336-24852437,
            24853315-24853384,24853725-24853824,24853931-24854025,
            24854105-24854184,24854361-24854439,24854603-24854663,
            24855570-24855984
          Length = 1018

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 140  RFDLGSFIMYYSRKSSHCGNESQEDMVLHLGR*ITVVPYSLSLVP 6
            RF  G  I  +S  +++CG  +    +L LGR + VVP  +  +P
Sbjct: 891  RFAQGHLITLFSA-TNYCGTANNAGAILVLGRDLVVVPKLIHPLP 934


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,108,737
Number of Sequences: 37544
Number of extensions: 317821
Number of successful extensions: 882
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)