Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0583
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81)          34   0.12 
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)                     31   1.1  
SB_16906| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_50376| Best HMM Match : DUF941 (HMM E-Value=0.85)                   29   4.5  

>SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81)
          Length = 468

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
 Frame = -1

Query: 617 VMTVVLWLLKFSVSLQ---AFASFIAFEATR*VLITSLLETTMLIASVFQTSMLQTLFQT 447
           V+  V W++KF  SL     ++S +  + T   ++TS+   +  + SVF  S   TL  T
Sbjct: 38  VIPNVTWVIKFISSLTRLVTYSSNVTRDVTVISIVTSIFRISSSVISVFTLSFSVTLVVT 97

Query: 446 AVFKASVLKTSRSNMVFNVVSV 381
            +  +SV+  + S+ V +VV V
Sbjct: 98  VI--SSVIVVTISSSVTSVVKV 117


>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
          Length = 1249

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = -1

Query: 587 FSVSLQAFASFIAFEATR*VLITSLLETTMLIASVFQTSMLQTLFQT-AVFKASVLKTSR 411
           F  S    +S IAF+ T  +L TS+L  T  I S  Q +    L    +V  +SV+++S+
Sbjct: 656 FESSADVSSSSIAFDITS-ILSTSVLPETTSIQSTMQPNTSTVLSSVDSVDSSSVVESSQ 714

Query: 410 SNMVFNVVSVVLEDKSTAVLVF 345
           S     + S   E  S    ++
Sbjct: 715 SRTAATINSTTQESSSFQTSIY 736



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
 Frame = -1

Query: 587 FSVSLQAFASFIAFEATR*VLITSLLETTMLIASVFQTSMLQTLFQTAVFKASVL----- 423
           F  S    +S IAF+      ITS+  T++L  +  + SM+Q +  T+    SVL     
Sbjct: 607 FESSADVSSSSIAFD------ITSIRSTSVLPGTTSKLSMIQPITSTSFTTTSVLFESSA 660

Query: 422 KTSRSNMVFNVVSVVLEDKSTAVL 351
             S S++ F++ S++    ST+VL
Sbjct: 661 DVSSSSIAFDITSIL----STSVL 680


>SB_16906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 203 RQISPVDQVRTLPPRSCVREEGAQPPSQAPS*KGKIRAKPQADSPR 340
           +Q +PV  + T+PP +   E     P+Q    + K   KP+ + P+
Sbjct: 29  QQAAPVAALPTIPPPTTAPEPAKNQPAQDKKKEKKSEKKPKTEKPK 74


>SB_50376| Best HMM Match : DUF941 (HMM E-Value=0.85)
          Length = 608

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 264 KEHSHLLKHPLEKGKSEQNLKLIHPETEHKHGG 362
           +E    L HPL+ G++ Q+++ I  E E KHGG
Sbjct: 12  EEQPQPLSHPLDHGETGQSVE-IGGEEETKHGG 43


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,969,760
Number of Sequences: 59808
Number of extensions: 346124
Number of successful extensions: 979
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)