Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0583
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr...    33   0.24 
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr...    33   0.24 
Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical pr...    27   9.2  
EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient rec...    27   9.2  

>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical
           protein F29G6.3c protein.
          Length = 1453

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
 Frame = +3

Query: 207 KSHQSIKFEHFHP-VPVYVKKEHSHLLKH---PLEKGKSEQNLKLIHPETEHKHGGGLVL 374
           KS    +  H+ P  P  VK +   + +H   PLEK     +LK++HPE  +        
Sbjct: 713 KSRSVERAHHYLPDSPANVKDQRKIIREHHYVPLEKRSQSLDLKVVHPEHHYVPLVRKTT 772

Query: 375 EDDRH--NIEHHIASA 416
           ED +   N EHH   A
Sbjct: 773 EDHQQKVNHEHHFIPA 788


>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical
           protein F29G6.3b protein.
          Length = 1785

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
 Frame = +3

Query: 207 KSHQSIKFEHFHP-VPVYVKKEHSHLLKH---PLEKGKSEQNLKLIHPETEHKHGGGLVL 374
           KS    +  H+ P  P  VK +   + +H   PLEK     +LK++HPE  +        
Sbjct: 713 KSRSVERAHHYLPDSPANVKDQRKIIREHHYVPLEKRSQSLDLKVVHPEHHYVPLVRKTT 772

Query: 375 EDDRH--NIEHHIASA 416
           ED +   N EHH   A
Sbjct: 773 EDHQQKVNHEHHFIPA 788


>Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical
           protein C29E6.2 protein.
          Length = 1193

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 237 FHPVPVYVKKEHSHLLKHPLEK 302
           +HP+ +    E  HLL HPL K
Sbjct: 760 YHPLKLMADAEKLHLLNHPLSK 781


>EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient
           receptor potential subfamilyA-1 protein.
          Length = 1206

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 237 FHPVPVYVKKEHSHLLKHPLEK 302
           +HP+ +    E  HLL HPL K
Sbjct: 773 YHPLKLMADAEKLHLLNHPLSK 794


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,084,489
Number of Sequences: 27780
Number of extensions: 251495
Number of successful extensions: 730
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)