Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0583
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel...    32   0.40 
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel...    30   1.6  
At3g10660.1 68416.m01282 calcium-dependent protein kinase isofor...    28   6.5  
At2g27210.1 68415.m03270 kelch repeat-containing serine/threonin...    28   6.5  
At1g08420.1 68414.m00931 kelch repeat-containing protein / serin...    28   6.5  

>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
            contains Pfam PF00400: WD domain, G-beta repeat; similar
            to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
            trafficking regulator - Bos taurus, EMBL: AF114785
          Length = 3471

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -1

Query: 290  VLEKVAVLLLHVHRNGVEVFELDRLVRFGVFVFN 189
            VLEK+ +LL  +  NG    EL+ +VRF +  FN
Sbjct: 1590 VLEKLVILLRCILENGFLTPELEDVVRFAIMTFN 1623


>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
            similar to BEIGE (GI:3928547) [Rattus norvegicus];
            Similar to gb|U70015 lysosomal trafficking regulator from
            Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
            repeats. ESTs gb|T43386 and gb|AA395236 come from this
            gene
          Length = 3601

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -1

Query: 290  VLEKVAVLLLHVHRNGVEVFELDRLVRFGVFVFN 189
            VLEK+ VLL  +  +G    EL+ +VRF +  FN
Sbjct: 1636 VLEKLVVLLGCILEDGFLTSELENVVRFVIMTFN 1669


>At3g10660.1 68416.m01282 calcium-dependent protein kinase isoform 2
           (CPK2) identical to calcium-dependent protein kinase
           isoform 2 [Arabidopsis thaliana] gi|9837343|gb|AAG00535;
           contains protein kinase domain, Pfam:PF00069; contains
           EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 646

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = +2

Query: 203 RQISPVDQVRTLPPRSCVREEGAQPPSQAPS*KGKIRAKPQADSPRD*TQARRWTCPRGR 382
           +++ P +  + +PP    RE   QP S  P  + K  +KP+   P   ++ +  T    +
Sbjct: 99  QKVVPEESKQEVPPEESKREVVVQPESAKP--ETKSESKPETTKPETTSETKPETKAEPQ 156

Query: 383 QTQH 394
           + +H
Sbjct: 157 KPKH 160


>At2g27210.1 68415.m03270 kelch repeat-containing serine/threonine
            phosphoesterase family protein similar to SP|P48482
            Serine/threonine protein phosphatase PP1 isozyme 2 (EC
            3.1.3.16) {Arabidopsis thaliana}; contains Pfam profile
            PF00149: Calcineurin-like phosphoesterase
          Length = 1006

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 140  RFDLGSFIMYYSRKSSHCGNESQEDMVLHLGR*ITVVPYSLSLVP 6
            RF  G  I  +S  +++CG  +    +L LGR + VVP  +  +P
Sbjct: 916  RFAQGHLITLFSA-TNYCGTANNAGAILVLGRDLVVVPKLIHPLP 959


>At1g08420.1 68414.m00931 kelch repeat-containing protein /
            serine/threonine phosphoesterase family protein contains
            Pfam profiles: PF00149 calcineurin-like phosphoesterase,
            PF01344 kelch motif
          Length = 1018

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 140  RFDLGSFIMYYSRKSSHCGNESQEDMVLHLGR*ITVVPYSLSLVP 6
            RF  G  I  +S  +++CG  +    +L LGR + VVP  +  +P
Sbjct: 927  RFAQGHLITLFSA-TNYCGTANNAGAILVLGRDLVVVPKLIHPLP 970


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,602,212
Number of Sequences: 28952
Number of extensions: 241249
Number of successful extensions: 674
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)