Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0582
         (331 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047651-2|AAL13318.1|  486|Caenorhabditis elegans Hypothetical ...    26   5.5  
AF047651-1|AAK67207.1|  484|Caenorhabditis elegans Hypothetical ...    26   5.5  
Z92832-1|CAB07370.1|  450|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical ...    25   9.7  

>AF047651-2|AAL13318.1|  486|Caenorhabditis elegans Hypothetical
           protein C05D2.10b protein.
          Length = 486

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 44  PVIMLPKDQRIDVIHDLSD*KRLSISEN*LKYKKQKTCC 160
           PVI +P D R   I+DL+   RL    N   +++  TCC
Sbjct: 419 PVIAIPMDNRHVRIYDLNG-NRLPRMPNRRCHERMVTCC 456


>AF047651-1|AAK67207.1|  484|Caenorhabditis elegans Hypothetical
           protein C05D2.10a protein.
          Length = 484

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 44  PVIMLPKDQRIDVIHDLSD*KRLSISEN*LKYKKQKTCC 160
           PVI +P D R   I+DL+   RL    N   +++  TCC
Sbjct: 417 PVIAIPMDNRHVRIYDLNG-NRLPRMPNRRCHERMVTCC 454


>Z92832-1|CAB07370.1|  450|Caenorhabditis elegans Hypothetical
           protein F31D4.2 protein.
          Length = 450

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 17  DHFAWITPMPVIMLPKDQRIDVIHDLSD*KRLSISEN*LKYKK 145
           DH  WI+P     + K+ R D+  DL +   L I +  L Y+K
Sbjct: 339 DHLFWISPHAYYAMEKEAR-DLYDDLKN-SSLIIFKGDLNYRK 379


>AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical
            protein R10F2.1 protein.
          Length = 2779

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 2    INQLNDHFAWITPMPVIMLPKDQR 73
            ++ +NDH  +I   P ++LP   R
Sbjct: 1420 VDDVNDHTPFIVSQPTVLLPSSYR 1443


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,213,319
Number of Sequences: 27780
Number of extensions: 120971
Number of successful extensions: 194
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)