Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0581
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    25   5.7  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   7.5  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    25   7.5  

>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 277 FSADLKSFVFSANVLQLTGFLSLDSPARF 191
           F A +    +S   L LTGFL +++PA +
Sbjct: 48  FRAIMAKKEYSLRALNLTGFLIMNNPAHY 76


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 434 KTFQMNEYFWTRCWGLFG*LK 372
           + F+ +EY W  CW  +G L+
Sbjct: 56  RPFRQDEYSWNDCWMRWGQLR 76


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 178 NTGYETWQGNQGSGNRSTEEH 240
           N GY+ W GN   GN+ + +H
Sbjct: 158 NKGYDVWLGN-NRGNKYSRQH 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,922,104
Number of Sequences: 5004
Number of extensions: 33870
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)