Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0581
         (559 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to c...    28   3.7  
At2g32370.1 68415.m03956 homeobox-leucine zipper family protein ...    23   9.1  

>At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to
           chromomethylase GB:AAC02660 GI:2865416 from [Arabidopsis
           thaliana]
          Length = 791

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 169 EGYNTGYETWQGNQGSGN 222
           +GYN+ Y+TW+   G GN
Sbjct: 367 KGYNSSYDTWEPYSGLGN 384


>At2g32370.1 68415.m03956 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           HD-Zip homeo domain OCL5 protein (GI:8920427) [Zea
           mays]; contains Pfam PF00046: Homeobox domain and Pfam
           PF01852: START domain
          Length = 721

 Score = 23.4 bits (48), Expect(2) = 9.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 148 DNDNIGVEGYNTGYETWQGNQGSGNRSTEEH 240
           +N+N G +  N G ++   +  SGN S+  H
Sbjct: 25  NNNNGGTDNTNAGNDSGDQDFDSGNTSSGNH 55



 Score = 21.8 bits (44), Expect(2) = 9.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 358 SHSQGLSQPNRPQHLVQKYS 417
           +H +GL     P+H  +KY+
Sbjct: 54  NHGEGLGNNQAPRHKKKKYN 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,194,100
Number of Sequences: 28952
Number of extensions: 184079
Number of successful extensions: 449
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)