Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0580
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    32   0.077
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.23 
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   6.7  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   6.7  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   8.8  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    25   8.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.9 bits (69), Expect = 0.077
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 386 LPLPWSLPPMASPHLTESPRPTPLMALTGSPPTALASTLGKPI 514
           +P P SLPP A P L  S  P+  M    +PP   ++ +  P+
Sbjct: 417 VPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPL 459


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 386  LPLPWSLPPMASPHLTESPRPTPLMALTGSPPTALASTLGKPITTA 523
            +P P  +PP+  P +   P P P +A+   P  + A  + KP   A
Sbjct: 1085 VPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAA 1130



 Score = 29.9 bits (64), Expect = 0.31
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 386  LPLPWSLPPMASPHLTESPRPTPLMALTGSPPTALASTLGKPITTAS 526
            +P+P   PP+  P +   P P P    +G+PP    S    P+   S
Sbjct: 1133 VPVPSGAPPVPKPSVAAPPVPAP----SGAPPVPKPSVAAPPVPAPS 1175



 Score = 29.1 bits (62), Expect = 0.54
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 386  LPLPWSLPPMASPHLTESPRPTPLMALTGSPPTALASTLGKPITTAS 526
            +P P   PP+  P +   P P P    +G+PP    S    P+   S
Sbjct: 1114 VPAPSGAPPVPKPSVAAPPVPVP----SGAPPVPKPSVAAPPVPAPS 1156


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = +2

Query: 389 PLPWSLPPMASPHLTESPRPTPLMALTGSPPTALASTLGKPITTASRYFLISAMQK 556
           PL  S+  + SPH+ +   P PL+    S P    + +       +R +L+    K
Sbjct: 290 PLTSSITSLDSPHVLDENAPIPLLPKVVSLPDPRFTNVLSAFDALTRTYLLRQNSK 345


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 395 PWSLPPMASPHLTESPRPTP 454
           PWS  P+ASP +   P   P
Sbjct: 418 PWSRSPVASPSIQTDPNRNP 437


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 410 PMASPHLTESPRPTP-LMALTGSPPTALASTLGKPITTASRYFLISA 547
           PMA   +  +P P P   AL   PP AL +  G P T AS   L +A
Sbjct: 232 PMAGQPIAIAPVPAPNQAALPPIPPQALPAN-GTPNTLASPVTLPAA 277


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 401 SLPPMASPHLTESPRPT 451
           SLPP+  P+L   P PT
Sbjct: 534 SLPPIVKPNLMSEPTPT 550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,586,998
Number of Sequences: 5004
Number of extensions: 21712
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)