Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0580
(621 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45137| Best HMM Match : Involucrin2 (HMM E-Value=0.59) 31 0.75
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0) 31 0.75
SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18) 31 1.00
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062) 29 2.3
SB_24945| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_16817| Best HMM Match : zf-CCCH (HMM E-Value=0.15) 29 3.0
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0) 28 5.3
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0) 28 7.0
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 28 7.0
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 28 7.0
>SB_45137| Best HMM Match : Involucrin2 (HMM E-Value=0.59)
Length = 421
Score = 31.1 bits (67), Expect = 0.75
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 406 APYGIAAPYGIAAPYTAYGAYGV-APYGL 489
AP+G+ PYG + P + YG PYGL
Sbjct: 381 APFGLQVPYGYSVPCSLQTPYGYPVPYGL 409
>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1387
Score = 31.1 bits (67), Expect = 0.75
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 406 APYGIAAPYGIAAPYTAYGAYGV-APYGL 489
AP+G+ PYG + P + YG PYGL
Sbjct: 1224 APFGLQVPYGYSVPCSLQTPYGYPVPYGL 1252
>SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 31.1 bits (67), Expect = 0.75
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +1
Query: 400 VTAPYGIAAPYGIAAPYTAYGAYGVA-PYGL 489
+T PYGI PY I PY Y + PY +
Sbjct: 583 ITCPYGITYPYDITCPYNITCPYDITWPYDI 613
Score = 31.1 bits (67), Expect = 0.75
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +1
Query: 400 VTAPYGIAAPYGIAAPYTAYGAYGV-APYGL 489
+T PY I PY I PY Y + PYG+
Sbjct: 595 ITCPYNITCPYDITWPYDITWPYDITCPYGI 625
Score = 31.1 bits (67), Expect = 0.75
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 400 VTAPYGIAAPYGIAAPYTAYGAYGV-APYGL 489
+T PYGI YGI PY +G+ PY +
Sbjct: 619 ITCPYGITCLYGITCPYGITCQFGITCPYDI 649
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +1
Query: 400 VTAPYGIAAPYGIAAPYTAYGAYG-VAPYGL 489
+T PY I PY I PY YG YG+
Sbjct: 463 ITCPYDITCPYDIKCPYDITCLYGFTCAYGI 493
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +1
Query: 400 VTAPYGIAAPYGIAAPYTAYGAYGV-APYGL 489
+T PYGI +GI PY Y + PY +
Sbjct: 631 ITCPYGITCQFGITCPYDITCPYDITCPYDI 661
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +1
Query: 400 VTAPYGIAAPYGIAAPYTAYGAYGVA-PYGL 489
+T PY I PY I PY Y + PY +
Sbjct: 643 ITCPYDITCPYDITCPYDITCPYDITYPYDI 673
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +1
Query: 400 VTAPYGIAAPYGIAAPYTAYGAYGVA-PYGL 489
+T PY I PY I PY Y + PY +
Sbjct: 499 ITCPYDITCPYDITCPYYITCPYDITYPYDI 529
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +1
Query: 400 VTAPYGIAAPYGIAAPYTAYGAYGVA-PYGL 489
+T PY I PY I PY Y + PY +
Sbjct: 517 ITCPYDITYPYDITCPYDITCPYDITYPYDI 547
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +1
Query: 400 VTAPYGIAAPYGIAAPYTAYGAYGV-APYGL 489
+T PY I PY I PY YG+ YG+
Sbjct: 601 ITCPYDITWPYDITWPYDITCPYGITCLYGI 631
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 400 VTAPYGIAAPYGIAAPYTAYGAYGV 474
+T PY I PY I PY YG+
Sbjct: 667 ITYPYDITYPYDITCPYYITCPYGI 691
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +1
Query: 400 VTAPYGIAAPYGIAAPYTAYGAYGVA-PYGL 489
+T PY I PY I PY Y + PY +
Sbjct: 715 ITYPYDITCPYHITCPYDITWPYDITWPYDI 745
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = +1
Query: 400 VTAPYGIAAPYGIAAPYTAYGAYGV-APY 483
+T PY I PY I PY Y + PY
Sbjct: 529 ITCPYDITCPYDITYPYDITYPYDITCPY 557
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +1
Query: 400 VTAPYGIAAPYGIAAPYTAYGAYGV-APYGL 489
+T PY I PY I PY Y + PY +
Sbjct: 547 ITYPYDITCPYHITCPYDITCPYDIKCPYDI 577
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = +1
Query: 400 VTAPYGIAAPYGIAAPYTAYGAYGV-APY 483
+T PY I PY I PY Y + PY
Sbjct: 655 ITCPYDITCPYDITYPYDITYPYDITCPY 683
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +1
Query: 400 VTAPYGIAAPYGIAAPYTAYGAYGV-APYGL 489
+T PYGI Y I PY Y + PY +
Sbjct: 685 ITCPYGITCQYDITCPYHITCPYHITCPYDI 715
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = +1
Query: 400 VTAPYGIAAPYGIAAPYTAYGAYGV-APY 483
+T PY I PY I PY Y + PY
Sbjct: 697 ITCPYHITCPYHITCPYDITYPYDITCPY 725
>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1984
Score = 31.1 bits (67), Expect = 0.75
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 406 APYGIAAPYGIAAPYTAYGAYGV-APYGL 489
AP+G+ PYG + P + YG PYGL
Sbjct: 1449 APFGLQVPYGYSVPCSLQTPYGYPVPYGL 1477
>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
Length = 1425
Score = 30.7 bits (66), Expect = 1.00
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 501 SVDAKAVGGDPVSAISGVGRGDSVRCGDAIGGSDQGRGR 385
+ DA G +A +G G+G G + GG +GRGR
Sbjct: 1343 NADAVGAAGSDAAAATGSGKGPEGILGQSPGGRGRGRGR 1381
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Frame = +1
Query: 406 APYGIAAPYGIAAPYTAYGAYGV-APYGLG 492
APY PY I PY Y APY G
Sbjct: 1335 APYNTGEPYNIGVPYNTGAPYNTGAPYSTG 1364
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/29 (41%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Frame = +1
Query: 409 PYGIAAPYGIAAPYTAYGAYGVA-PYGLG 492
PY I PY APY Y PY G
Sbjct: 1342 PYNIGVPYNTGAPYNTGAPYSTGEPYRTG 1370
>SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
Length = 406
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +2
Query: 401 SLPPMASPHLTESPRPTPLMALTGSPPTALASTLGKPITT 520
S+PP +PH + P PTP T PPT T P T
Sbjct: 242 SIPPTPTPHTSIPPTPTP---HTSIPPTPTPHTSIPPTPT 278
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 401 SLPPMASPHLTESPRPTPLMAL--TGSPPTALAST 499
S+PP +PH + P PTP ++ T +P T++ T
Sbjct: 262 SIPPTPTPHTSIPPTPTPHTSIPPTPTPHTSIPPT 296
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 401 SLPPMASPHLTESPRPTPLMALTGSP-PT 484
S+PP +PH + P PTP ++ +P PT
Sbjct: 272 SIPPTPTPHTSIPPTPTPHTSIPPTPHPT 300
>SB_24945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 395 PWSLPPMASPHLTESPRPTPLMALTGSPPTALASTLGKPI 514
P + P+ +P PRP P+ A G P S G PI
Sbjct: 232 PQAAQPLPTPTARGRPRPRPIAATPGHPLGIPVSRAGPPI 271
>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1021
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 419 SPHLTESPRPTPLMALTGSPPTAL 490
+PH+ SP P P TGSP T L
Sbjct: 779 NPHMGSSPAPIPSPTSTGSPQTPL 802
>SB_16817| Best HMM Match : zf-CCCH (HMM E-Value=0.15)
Length = 794
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +2
Query: 401 SLPPMASPHLTESPRPTPLMALTGSPPTALASTLGKPITTASRYFLISAMQ 553
SLPP++S H +P P MA PPT + + G+P++ R+ + +A Q
Sbjct: 614 SLPPVSS-HSMFQHQPHPSMAC---PPTMMVTPDGRPLSGEWRHCMQAAYQ 660
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 416 ASPHLTESPRPTPLMALTGSP-PTALASTLGKPITTAS 526
A+P TE+P T + T +P TA+ T P TTA+
Sbjct: 833 AAPETTETPETTAVPETTAAPETTAVPETTAAPETTAA 870
>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 751
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 407 PPMASPHLTESPRPTPLMALTGSPPTALAS 496
PP P T +P PT A T +PPT ++
Sbjct: 182 PPTLPPPPTTTPPPTTTQATTTNPPTTTST 211
>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1020
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 388 ASPLVTAPYGIAAPYGIAAPYTAYGAYGVAPY 483
+SP+ PYG + P + PY YG+ Y
Sbjct: 817 SSPVYEVPYGYSVPCSLQTPYGYPVPYGLQDY 848
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Frame = +2
Query: 389 PLPWSLPPMAS---PHL--TESPRPTPLMALTGSPP 481
PLP S+P + PHL T PRPT + L +PP
Sbjct: 606 PLPLSIPLLLQATPPHLQSTAQPRPTTVPPLPPTPP 641
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 407 PPMASPHLTESPRPTPLMALTGSPP 481
PP SP P P P+ TG PP
Sbjct: 128 PPPTSPATRAPPPPPPIAPATGGPP 152
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,750,336
Number of Sequences: 59808
Number of extensions: 195093
Number of successful extensions: 983
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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