Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0580
(621 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g24550.1 68416.m03083 protein kinase family protein contains ... 31 0.47
At5g10430.1 68418.m01209 arabinogalactan-protein (AGP4) identica... 29 2.5
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 29 2.5
At4g01985.1 68417.m00265 expressed protein 29 2.5
At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family... 29 2.5
At5g11990.1 68418.m01402 proline-rich family protein contains pr... 29 3.3
At4g08370.1 68417.m01382 proline-rich extensin-like family prote... 29 3.3
At5g38560.1 68418.m04662 protein kinase family protein contains ... 28 4.3
At5g33390.1 68418.m03985 glycine-rich protein similar to nuclear... 28 4.3
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 28 4.3
At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7) 28 5.7
At3g16200.1 68416.m02045 expressed protein 28 5.7
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 27 7.6
At1g26150.1 68414.m03192 protein kinase family protein similar t... 27 7.6
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 31.5 bits (68), Expect = 0.47
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 389 PLPWSLPPMASP-HLTES-PRPTPLMALTGSPPT 484
PLP SLPP + P LT P+P+P +T SPP+
Sbjct: 59 PLPPSLPPPSPPGSLTPPLPQPSPSAPITPSPPS 92
>At5g10430.1 68418.m01209 arabinogalactan-protein (AGP4) identical
to gi_3883126_gb_AAC77826
Length = 135
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 389 PLPWSLPPMASPHLTESPRP--TPLMALTGSPPTALASTLGKPITT 520
P P + PP A+P +P P TP A T +P T + P TT
Sbjct: 26 PTPTATPPPATPPPVATPPPVATPPPAATPAPATPPPAATPAPATT 71
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 389 PLPWSLPPMASPHLTESPRPTPLMALTGSPPTALAS 496
P P S PP P+L+ P PTP ++ PPT + S
Sbjct: 576 PPPHSPPPPIYPYLSPPPPPTP---VSSPPPTPVYS 608
>At4g01985.1 68417.m00265 expressed protein
Length = 579
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 486 AVGGDPVSAISGVGRGDSVRCGDAIGGSDQGRG 388
AVGG ++ G GRG G A GG+ G G
Sbjct: 301 AVGGGGGGSVGGGGRGSGGASGGASGGASGGAG 333
>At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family
protein
Length = 660
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 410 PMASPHL-TESPRPTPLMALTGSPPTALASTLGKPITTASRYFL 538
P+ PH T PRP P AL S ++ L +P TA L
Sbjct: 405 PLHQPHSNTSQPRPIPQQALAQSNTNITSTALPRPSITAEARLL 448
>At5g11990.1 68418.m01402 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 181
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 407 PPMASPHLTESPRPTPLMALTGSPP 481
PP + P + SP P+P + L+ SPP
Sbjct: 44 PPPSKPSPSMSPPPSPSLPLSSSPP 68
>At4g08370.1 68417.m01382 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 350
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 407 PPMASPHLTESPRPTPLMALTGSPP 481
PP+ SP++ +SP P+P + + PP
Sbjct: 44 PPLPSPYVYKSPPPSPYLYSSPPPP 68
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 407 PPMASPHLTESPRPTPLMALTGSPPTALASTLGKPITTAS 526
P ++SP + SP P+P + SPP +AS+ P+ AS
Sbjct: 59 PVVSSPPPSSSPPPSP--PVITSPPPTVASSPPPPVVIAS 96
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Frame = +2
Query: 389 PLPWSLPPMASPHLTESP-----RPTPLMALTGSPPTALASTLGKPITTAS 526
P P S PP + P +T P P P + + PP+ A+T P T S
Sbjct: 64 PPPSSSPPPSPPVITSPPPTVASSPPPPVVIASPPPSTPATTPPAPPQTVS 114
>At5g33390.1 68418.m03985 glycine-rich protein similar to nuclear
antigen EBNA-1 (GI:3342234) {Cercopithecine herpesvirus
15}
Length = 118
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 453 GVGRGDSVRCGDAIGGSDQGRGR 385
G GRGD G IGG +GRGR
Sbjct: 57 GGGRGDGRGDGRGIGGGGRGRGR 79
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +2
Query: 395 PWSLPPMASPHLTESPRPTPLMALTGSPPTALASTLGKP 511
P LPP SP T +P P P A+T PP A+ L P
Sbjct: 90 PKPLPPPLSPPQT-TPPPPP--AITPPPPPAITPPLSPP 125
>At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)
Length = 130
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 407 PPMASPHLTESPRPTPLMALTGSPPTALAS 496
PP A+P T +P P A T SPP++ S
Sbjct: 41 PPAATPAPTTTPPPAVSPAPTSSPPSSAPS 70
>At3g16200.1 68416.m02045 expressed protein
Length = 452
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 386 LPLPWSLPPMASPHLTESPRPTPLMA 463
L + W LPP+A P LT R P A
Sbjct: 385 LDVYWELPPVAGPSLTHQSRYDPARA 410
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +2
Query: 389 PLPWSLPPMASPHLTESPRPT---PLMALTGSPPTALASTLGKP 511
P P PP+ P L + P PT P+ PPT + S KP
Sbjct: 395 PTPTYSPPIKPPPLQKPPTPTYSPPIKLPPVKPPTPIYSPPVKP 438
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 401 SLPPMASPHLTESPRPT-PLMALTGSPPTAL 490
S PP +P + P P+ P +LTG PPT +
Sbjct: 60 SSPPPETPLSSPPPEPSPPSPSLTGPPPTTI 90
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,707,789
Number of Sequences: 28952
Number of extensions: 134495
Number of successful extensions: 867
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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