Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0579
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z99280-3|CAE18018.1|  215|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z83317-3|CAB05897.1|  217|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical...    28   5.4  
AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical ...    28   7.2  

>Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical
           protein K03D3.14 protein.
          Length = 281

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/91 (20%), Positives = 46/91 (50%)
 Frame = -1

Query: 376 LRVCN*LLVKCRLFCIRISLAFHQCICLAKFMVKEQCTVPLLKWFKTQQLWMLNLVYLPH 197
           L  C+  ++      +  S+A  +C+C   F  + +  +   +     ++W+L +V++  
Sbjct: 73  LMYCSLFIIDQTFGMLVFSIALEKCLC--NFFPRLEPYLTSARDGFLNKIWILYIVHVL- 129

Query: 196 *FGQPKELTLISHTRMVVVFRYKIFLVFALL 104
                KE+++   TR ++ ++YKI+  F++L
Sbjct: 130 -----KEISIYVVTRRILKYQYKIYNPFSIL 155


>U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical
           protein K02F3.6 protein.
          Length = 404

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 312 KASEIRIQNNRHFTRS*LQTRKNNYSQN 395
           +A EI IQNN++FT   L+  K ++S N
Sbjct: 289 RAKEIGIQNNKNFTDEDLEAWKYSFSMN 316


>Z99280-3|CAE18018.1|  215|Caenorhabditis elegans Hypothetical
           protein Y57G11B.7 protein.
          Length = 215

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -3

Query: 431 MPNYNVRTLSRMILGVIIFTSL*LASCKMSVILYPYFTGFSSMHLLGQVH 282
           MPNYN++    M L  ++FT   L  C  ++ L+P   G ++++ +   H
Sbjct: 168 MPNYNIQFAEGMSLAAVLFT---LIIC-ATMFLHPLSMGSTNVYFVPGYH 213


>Z83317-3|CAB05897.1|  217|Caenorhabditis elegans Hypothetical
           protein F13G11.2 protein.
          Length = 217

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -3

Query: 431 MPNYNVRTLSRMILGVIIFTSL*LASCKMSVILYPYFTGFSSMHLLGQVH 282
           MPNYN++    M L  ++FT   L  C  ++ L+P   G ++++ +   H
Sbjct: 170 MPNYNIQFAEGMSLAAVLFT---LIIC-ATMFLHPLSMGSTNVYFVPGYH 215


>AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical
           protein C15F1.2 protein.
          Length = 801

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 16  QQTFAKITNTVNQIENASLAGLTNHALKQVIRQIL 120
           ++T   +T T+N+I+   +      A+K V+RQ+L
Sbjct: 734 ERTIISLTATINEIKQECVKRKAKEAVKNVVRQLL 768


>AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical
           protein Y68A4A.2 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -1

Query: 646 VRLLIIISGLCESKPYNYLSLVSFDIDTFIGLKVFKLFQLNHV*GYSSM 500
           VR L+ +  +  SKP+NY+ L +  + T   + +      +H   +SSM
Sbjct: 213 VRRLVNLQSVQRSKPHNYIFLQTMVVFTLKSIHILIYMVTSHGGNFSSM 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,139,967
Number of Sequences: 27780
Number of extensions: 305256
Number of successful extensions: 570
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)