Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0579
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54040.1 68418.m06721 DC1 domain-containing protein contains ...    28   5.0  
At1g02150.1 68414.m00141 pentatricopeptide (PPR) repeat-containi...    28   5.0  

>At5g54040.1 68418.m06721 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 596

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = -2

Query: 417 CPYFKQNDSGSNYFYESVISFL*NVGYFVSVFHWLFINAFAWPSSWLKNSVQCHY 253
           C  ++  D G     E V     N  +  +    ++ N FAWP    K+ + CH+
Sbjct: 52  CISYECTDCGLTLHKECVDHLFLNRPFLCNHVLKIYRNTFAWPDPDRKDDLSCHF 106


>At1g02150.1 68414.m00141 pentatricopeptide (PPR) repeat-containing
           protein low similiarity to DNA-binding protein [Triticum
           aestivum] GI:6958202; contains Pfam profile: PF01535 PPR
           repeat
          Length = 524

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -3

Query: 458 MLTEDVNLAMPNYNVRTLSRMILGVIIFTSL*LASCKMSVILYPYFTGFSSM 303
           M  +D+ L + +YN+   S   LG +    L     K  V +YP +T FS+M
Sbjct: 230 MKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVYQQMKSDVSIYPNWTTFSTM 281


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,095,301
Number of Sequences: 28952
Number of extensions: 274941
Number of successful extensions: 484
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)