Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0578
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    30   0.20 
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    29   0.47 
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    27   1.1  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   1.9  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   5.8  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    25   5.8  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   5.8  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   5.8  

>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 29.9 bits (64), Expect = 0.20
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = -1

Query: 214 LKSQNKKIYNSSIKF----WAFIKKHEFWVKKPLGCDIFFSFRETYT*EPLL 71
           L S NK +Y   I F    WAF+ +H +W+    G DI  + + +Y    LL
Sbjct: 559 LSSGNKNLYFKEIDFLENEWAFLNEHIYWIN---GGDIHMAGQFSYLSNSLL 607


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 28.7 bits (61), Expect = 0.47
 Identities = 14/27 (51%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = -1

Query: 268 SRK-DKRSIYLKSTAYVKVLKSQNKKI 191
           SRK +K +I  K+T Y+K L+S+NKK+
Sbjct: 476 SRKLNKATILSKATEYIKSLQSKNKKL 502


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 369 RNIFLKLLKKCFLNYEPLINMYSIN 295
           RN F+ L  +C+L Y P+  M+ +N
Sbjct: 166 RNTFVNLQTRCYLPYTPVRFMFGLN 190


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +3

Query: 12  NLSNKKNLISNIETIKKINCKSGS*VYVSRKLKKISHPKGFLTQNSCFLINAQNLI 179
           NLS + +  ++I T   +N      +  S   + +SHP    + NS  L+N+ N I
Sbjct: 142 NLSRQYSQPNHINTHDSVNSPPSYGIMASATNQPLSHPTIVPSSNSSSLLNSTNNI 197


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = -2

Query: 375 ILRNIFLKLLK--KCFLNYEPLINMYSINLRN*TVSFNPE 262
           I +N+F ++L   K   +Y+P+IN  S NL+  T+S  P+
Sbjct: 753 IFKNLFPEVLSFVKSNHSYDPIINCISTNLQF-TISDEPK 791


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = +3

Query: 3   LFPNLSNKKNLISNIETIKKINCKS--GS*VYVSRKLKKISHPKGFLTQNSCFLINAQNL 176
           L   L ++KNL+   E +KK + K        +S    K+S P   + +    L  +   
Sbjct: 363 LASELESQKNLLKKFENLKKKSSKDFLSPSTILSNAFSKVSLPNSLILR---VLFFSLLF 419

Query: 177 IEELYIFLFCDFNTLT 224
           I  ++IF F  F+  T
Sbjct: 420 IIGIHIFYFLFFHVAT 435


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 105  LKKISHPKGFLTQNSCFLINAQNLIEEL 188
            L+K SHP   L+ + C+L ++   IEE+
Sbjct: 2297 LRKHSHPMLKLSSSDCYLWSSSFYIEEI 2324


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -1

Query: 217 VLKSQNKKIYNSSIKFWAFIKKHEFWV 137
           ++  Q + +  +++KFW F    + WV
Sbjct: 457 IIDEQQRNVKQTALKFWQFDSVQKTWV 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,756,597
Number of Sequences: 5004
Number of extensions: 33107
Number of successful extensions: 91
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)