Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0578
         (469 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40936-1|AAL65777.2|  770|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical p...    27   8.9  
AF016424-1|AAB65331.2|  617|Caenorhabditis elegans Hypothetical ...    27   8.9  

>U40936-1|AAL65777.2|  770|Caenorhabditis elegans Hypothetical
           protein C13E3.1 protein.
          Length = 770

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -1

Query: 253 RSIYLKSTAYVKVLKSQNK-KIYNSSIKF 170
           R IY++STA ++VLKS    K ++SS  +
Sbjct: 49  REIYVRSTAAIEVLKSDEAFKTFSSSASY 77


>U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical
           protein C33F10.2 protein.
          Length = 826

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = -1

Query: 313 KHVFYQFTKLNSLF*SRKDKRSIYLKSTAYVKVLKSQNKKIYNSSIKFWAFI 158
           +++ + F  LNS++ + +  + + +K + Y     +   K   SSIKF AF+
Sbjct: 109 RNIVHGFLHLNSIYITDRKNQKLSVKLSGYGLPFLTNYGKDTASSIKFGAFL 160


>AF016424-1|AAB65331.2|  617|Caenorhabditis elegans Hypothetical
           protein F39G3.6 protein.
          Length = 617

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -1

Query: 253 RSIYLKSTAYVKVLKSQNKKIYNSSIKFWAFIKKH 149
           R +   +TA++  ++S++ +I N  +K   F+KKH
Sbjct: 280 RPMVTAATAFIIAVESKDNQINNLHLKVNLFLKKH 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,391,575
Number of Sequences: 27780
Number of extensions: 173245
Number of successful extensions: 356
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)