Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0578
         (469 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.31 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   2.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   6.6  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.4 bits (53), Expect = 0.31
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 205 QNKKIYNSSIKFWAFIKKH-EFWVKKPLGCDIF 110
           QN  +    +K  AF+K H   WVKKP+  D+F
Sbjct: 585 QNYSLAKHQLKE-AFVKAHLGSWVKKPIEQDMF 616


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 376 LSHFNYKGATFIETSD 423
           L HFNY    FI +SD
Sbjct: 162 LKHFNYMKVIFIHSSD 177


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 6   FPNLSNKKNLISNIETIKKINCKSGS*VYVSRKLKKISHPKGFLTQNSCFLI 161
           FPN + +  LISN + I++ N  +G  ++  +    I   K  +  N  F +
Sbjct: 31  FPNDNIRNTLISNGDYIEENNMPNGMQIWNDKVFITIPRWKNGVPSNLNFFL 82


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 150 CFLINAQNLIEELYIFLFCDFN 215
           C  I + + +  L ++LFCD++
Sbjct: 28  CKDITSTSALYRLKLYLFCDYD 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,065
Number of Sequences: 438
Number of extensions: 2067
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)