Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0575
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   3.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   3.3  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   4.3  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   4.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.9  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 50  SHDHDDDTDGIVLAKGISM 106
           SH   D  DGIVLA GI++
Sbjct: 280 SHRSIDVKDGIVLATGITV 298


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 50  SHDHDDDTDGIVLAKGISM 106
           SH   D  DGIVLA GI++
Sbjct: 280 SHRSIDVKDGIVLATGITV 298


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 47  VCKPFCLFVCWPGVV 3
           V KP C+ +C PG V
Sbjct: 58  VPKPLCIKICAPGCV 72


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 47  VCKPFCLFVCWPGVV 3
           V KP C+ +C PG V
Sbjct: 58  VPKPLCIKICAPGCV 72


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 158 ARKFRWLSVEDAGTFKSTNRVVMTLLSFG 244
           A + RW SV+   T   T ++  T L FG
Sbjct: 87  AHRIRWESVQKEVTVTGTYQLTETELVFG 115


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = +2

Query: 5   PHRANRQTNKMAYRHSHDHDDDTDGI 82
           P+      N   Y+H  DH    DG+
Sbjct: 82  PYNRMDMRNATYYQHQQDHGSGMDGM 107


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -1

Query: 758 RNGAPTCTKHGKC--CSPSQRLSLRRAHEQKELEQ 660
           RNG    T +     C P+ RL+  R +EQ+   Q
Sbjct: 297 RNGPTQTTLNATTLFCPPNLRLTSERGYEQESKVQ 331


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -1

Query: 758 RNGAPTCTKHGKC--CSPSQRLSLRRAHEQKELEQ 660
           RNG    T +     C P+ RL+  R +EQ+   Q
Sbjct: 387 RNGPTQTTLNATTLFCPPNLRLTSERGYEQESKVQ 421


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,150
Number of Sequences: 438
Number of extensions: 4773
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)