Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0573
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.3  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 86  RSSVLPQGYLLPTHSHVL 33
           R    P+G+++PTH  VL
Sbjct: 400 RLQTKPEGFMIPTHLKVL 417


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 335 TYADINSLGELQQQYLFGSQSR*FNV 412
           T  D+N++    Q +L GSQ R FNV
Sbjct: 179 TSIDLNAVRLCFQVFLEGSQKRKFNV 204


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 335 TYADINSLGELQQQYLFGSQSR*FNV 412
           T  D+N++    Q +L GSQ R FNV
Sbjct: 179 TSIDLNAVRLCFQVFLEGSQKRKFNV 204


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 200 FLYLFYCRYRLN*ILFNCLN 259
           FL+L YC   LN I++  LN
Sbjct: 412 FLWLGYCNSLLNPIIYATLN 431


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,458
Number of Sequences: 438
Number of extensions: 3921
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)