Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0572
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23560.1 68416.m02964 MATE efflux family protein similar to r...    28   3.2  
At1g05860.1 68414.m00613 expressed protein                             28   4.3  
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    27   9.9  
At3g63500.2 68416.m07153 expressed protein                             27   9.9  
At3g63500.1 68416.m07152 expressed protein                             27   9.9  
At3g58950.1 68416.m06569 F-box family protein contains F-box dom...    27   9.9  

>At3g23560.1 68416.m02964 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile: PF01554
           uncharacterized membrane protein family
          Length = 477

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 288 LLGARLYKKIINSLKLSFTNTCFWTDSTIVMGWIRMSPHLLK 413
           +LG  L    I SL  S   T FW  +  + G +R  P + K
Sbjct: 116 MLGVHLQSSCIVSLVFSILITIFWFFTESIFGLLRQDPSISK 157


>At1g05860.1 68414.m00613 expressed protein
          Length = 280

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 111 TQFIELHIFTDASQNAYGACAYIRTYNLNTEIT 209
           T + +LHI  D  Q  Y +C Y+     +  IT
Sbjct: 168 TNYCQLHILMDKKQKLYTSCTYVNKRAQSKAIT 200


>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 84  IPRQIRGSNTQFIELHIFTDASQNAYGACA 173
           +P QIRGS +QF ++ +   AS N+  AC+
Sbjct: 610 LPHQIRGSVSQFSQITLLGQAS-NSCTACS 638


>At3g63500.2 68416.m07153 expressed protein
          Length = 1162

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/55 (16%), Positives = 25/55 (45%)
 Frame = +3

Query: 342  TNTCFWTDSTIVMGWIRMSPHLLKTFVQNRVTELNELTGDSVWLHVNSKNNPADL 506
            +NTC W    + + W      + +++++N +          +  H  + N+P+++
Sbjct: 848  SNTCSWVGCDVCLHWCHTDCGIKESYIRNGINASGAPGMTEMQFHCVACNHPSEM 902


>At3g63500.1 68416.m07152 expressed protein
          Length = 887

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/55 (16%), Positives = 25/55 (45%)
 Frame = +3

Query: 342 TNTCFWTDSTIVMGWIRMSPHLLKTFVQNRVTELNELTGDSVWLHVNSKNNPADL 506
           +NTC W    + + W      + +++++N +          +  H  + N+P+++
Sbjct: 573 SNTCSWVGCDVCLHWCHTDCGIKESYIRNGINASGAPGMTEMQFHCVACNHPSEM 627


>At3g58950.1 68416.m06569 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 417

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 404 FIKNLCSKSCN*IKRIDRRLSMVTC 478
           F+ N C  +C+ + R D+  S+V+C
Sbjct: 307 FVTNKCGDACDYVSREDKGRSLVSC 331


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,557,681
Number of Sequences: 28952
Number of extensions: 198879
Number of successful extensions: 404
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)