Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0568
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    25   3.1  
SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces pomb...    25   4.1  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    24   7.1  

>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -1

Query: 358 KERNLLSINVCGLNNSDDGTFYRW*HRPVCLRRKGIMSWIF 236
           K  N   + V GL  + +  F  W H  V  +  GIM  IF
Sbjct: 367 KAANAGGVAVSGLEMAQNAQFSTWTHAEVDAKLAGIMQNIF 407


>SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 229 LFKRHCHFDIISP 191
           +F RHCH+ +I P
Sbjct: 7   VFSRHCHYSLIRP 19


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 188 RRRDYVEVAMAFE*LNENPRHDSFAA*TNRAVLPT 292
           RRR++ E+ +A + +NE  R  S AA       PT
Sbjct: 429 RRRNHTEIRLAEQRMNEERRRLSAAATATPMSAPT 463


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,433,571
Number of Sequences: 5004
Number of extensions: 27960
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)