Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0568
         (385 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4928| Best HMM Match : DUF590 (HMM E-Value=0)                       27   6.9  
SB_56694| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_44656| Best HMM Match : 7tm_1 (HMM E-Value=0)                       26   9.2  

>SB_4928| Best HMM Match : DUF590 (HMM E-Value=0)
          Length = 897

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 363 GIKREICFQ*TCVA*IILMMGHFIVGN 283
           G   + CF   C+  II+M+G  I+GN
Sbjct: 614 GCSEQGCFLELCIQLIIIMVGQQIIGN 640


>SB_56694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 409

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = -2

Query: 372 LDFGIKREICFQ*TCVA*IILMMGHFIVGNTALFVYA--AKESCLGFSFNYSNAIATST 202
           L F   ++I  +  C+A + + +  F V ++    +A  ++ES   FSF Y+  +AT++
Sbjct: 124 LPFQYSQKITKKRACLAIVFVWLYAFAVSSSRAISFAIPSRESRAQFSFGYTFFVATAS 182


>SB_44656| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 409

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = -2

Query: 372 LDFGIKREICFQ*TCVA*IILMMGHFIVGNTALFVYA--AKESCLGFSFNYSNAIATST 202
           L F   ++I  +  C+A + + +  F V ++    +A  ++ES   FSF Y+  +AT++
Sbjct: 124 LPFQYSQKITKKRACLAIVFVWLYAFAVSSSRAISFAIPSRESRAQFSFGYTFFVATAS 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,442,162
Number of Sequences: 59808
Number of extensions: 196499
Number of successful extensions: 333
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)