Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0568
         (385 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41012-5|AAR12968.1|  154|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AC087082-1|AAG37982.2|  157|Caenorhabditis elegans Hypothetical ...    27   4.5  
Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z83125-9|CAB05624.1|  338|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z82086-5|CAB04992.2|  325|Caenorhabditis elegans Hypothetical pr...    26   7.9  

>U41012-5|AAR12968.1|  154|Caenorhabditis elegans Hypothetical
           protein C06A6.7 protein.
          Length = 154

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 376 HLGFRDKERNLLSINVCGLNNSD 308
           H  FR KE+  L++NV   NN D
Sbjct: 71  HFTFRIKEKKFLTVNVTYYNNDD 93


>AC087082-1|AAG37982.2|  157|Caenorhabditis elegans Hypothetical
           protein Y92H12BM.1 protein.
          Length = 157

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 132 HRQFFINLYD-KMSRYYLLTAGEIMSKWQWRLNN*MKIQDMIPLRRKQT 275
           H+  +  L+D K  RYY   A   ++KWQ      + I D+IPL + QT
Sbjct: 4   HQNQWWELFDSKTGRYYYYNASSSVTKWQKPTG--IDI-DIIPLAKLQT 49


>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 159 DKMSRYYLLTAGEIMSKWQWRLN 227
           D  +R  L+ AG +  KW WR++
Sbjct: 59  DPSNRVLLIEAGPVDHKWDWRIH 81


>Z83125-9|CAB05624.1|  338|Caenorhabditis elegans Hypothetical
           protein T15D6.11 protein.
          Length = 338

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +3

Query: 48  FQVIRKFKQILCETSLCDQVVVEAKIL*HRQFFINLYDK--MSRYY 179
           F+V+++ K +  +T L D   V      HR FF+N+ D+  +++Y+
Sbjct: 296 FRVLKEQKYVFMKTMLTDAAGV------HRMFFVNVQDEECLAKYF 335


>Z82086-5|CAB04992.2|  325|Caenorhabditis elegans Hypothetical
           protein ZK228.5 protein.
          Length = 325

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 299 ILSLVTPPCLFTPQRNHVLDFHLIIQTPLPLRHNLSGG 186
           ILS +T   + TP R+  L+F  I Q P  +R +  GG
Sbjct: 284 ILSTLTMLIVHTPYRHATLEFFNIEQKPNTVRSSHVGG 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,845,578
Number of Sequences: 27780
Number of extensions: 154918
Number of successful extensions: 261
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)