Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0568
         (385 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62920.1 68414.m07104 expressed protein ; expression supporte...    27   3.3  
At3g26580.1 68416.m03318 expressed protein                             27   4.3  
At3g19570.2 68416.m02482 expressed protein contains Pfam domain,...    26   9.9  
At3g19570.1 68416.m02481 expressed protein contains Pfam domain,...    26   9.9  
At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1 ...    26   9.9  

>At1g62920.1 68414.m07104 expressed protein ; expression supported
           by MPSS
          Length = 260

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 175 YLLILSYKFIKNWRCYKIFASTTT-WSQRLVSHKICLN 65
           YL + + + ++N RC     STTT W   LVS K  LN
Sbjct: 72  YLNVSTPQILENPRCSNQLTSTTTSWKLGLVSPKAQLN 109


>At3g26580.1 68416.m03318 expressed protein 
          Length = 350

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 364 RDKERNLLSINVCGLNNSDD--GTFYRW*HRPVCLRRKGIMSWIFI*LF 224
           RDKER + +     LN+SDD  G    W  RPV    K  + W+ + L+
Sbjct: 292 RDKERRMNASTTNQLNSSDDFLGKLLVW--RPVVGMEKNRVFWLALTLW 338


>At3g19570.2 68416.m02482 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -1

Query: 175 YLLILSYKFIKNWRCYKIFASTTTWSQRLVSHKICLNLRIT*KELK 38
           +LL L Y     WR     A +T   QRL + KI  N  ++  EL+
Sbjct: 452 HLLRLLYNRDLQWRFANARADSTLMVQRLSAEKILWNAWVSISELR 497


>At3g19570.1 68416.m02481 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 627

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -1

Query: 175 YLLILSYKFIKNWRCYKIFASTTTWSQRLVSHKICLNLRIT*KELK 38
           +LL L Y     WR     A +T   QRL + KI  N  ++  EL+
Sbjct: 452 HLLRLLYNRDLQWRFANARADSTLMVQRLSAEKILWNAWVSISELR 497


>At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1
           subunit-related contains similarity to Swiss-Prot:P80387
           5'-AMP-activated protein kinase, beta-1 subunit (AMPK
           beta-1 chain) (AMPKb) (40 kDa subunit) [Sus scrofa]
          Length = 591

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = -3

Query: 362 G*REKFAFNKRVWLK*F**WDILSLVTPPCLFTPQRNHVLDFHLIIQTPLPLRHNLSGGK 183
           G REKF FN+R  +       +L +V      TP + ++ ++ + ++ PL +R  LS   
Sbjct: 43  GSREKFGFNRRRRV-------VLRVVAMSSSSTPFKMNLNEYMVTLEKPLGIRFALSADG 95

Query: 182 QI 177
           +I
Sbjct: 96  KI 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,380,162
Number of Sequences: 28952
Number of extensions: 142490
Number of successful extensions: 236
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)