Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0566
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047...    29   2.1  
01_06_1486 - 37709159-37709377,37709558-37709821,37709903-377099...    29   3.7  
07_03_0349 - 17051786-17052376                                         28   6.4  
06_03_0854 + 25400855-25403741,25406174-25407708                       27   8.5  
03_05_0736 - 27254502-27255497                                         27   8.5  

>08_02_1508 + 27602104-27602265,27602398-27602449,27603357-27604757,
            27604833-27606140,27606594-27607435
          Length = 1254

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 22/67 (32%), Positives = 29/67 (43%)
 Frame = -1

Query: 443  QRLTHPSN*NA*LLHGRNRQGSGTHLRGFTRGPTHSKQEVQPPVKNPLPKTNSNARLLPT 264
            +R T PS   A      NRQ + T L+G T         V+P V +P     S+ R  PT
Sbjct: 890  ERQTPPSKAQA---PASNRQSASTALQGGTPDARGENTAVKPSVTSPTGMPTSSRRQEPT 946

Query: 263  RIMVSKT 243
              + S T
Sbjct: 947  PSVTSPT 953


>01_06_1486 -
           37709159-37709377,37709558-37709821,37709903-37709995,
           37710387-37710581,37710665-37710763,37710884-37711132,
           37711264-37711467,37711543-37711602,37711731-37711913,
           37712382-37712999,37713101-37713169,37713275-37713853
          Length = 943

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 238 ALVLETMILVGSNRALLFVL-GSGFFTGGWTS 330
           AL+L T+IL+ S    L+V+ GSGF    W S
Sbjct: 318 ALLLATIILIASGGIALYVVSGSGFLEALWLS 349


>07_03_0349 - 17051786-17052376
          Length = 196

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 476 SRWVAHLICRCLWASVTS 529
           S +   L+CRC WAS TS
Sbjct: 23  SAYTVGLLCRCCWASTTS 40


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -1

Query: 398 GRNRQGSGTHLRGFTRGPTHSKQEVQPPVKNPLPKTNSNARLL 270
           G  R G G   RG  R PT +   V PP   P P   + A  L
Sbjct: 350 GLGRGGGGGRGRGGKRAPTTAVTVVAPPPPVPTPAAGAAAPTL 392


>03_05_0736 - 27254502-27255497
          Length = 331

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 56  SRLARWHIFLCAAGQM--ACRGRLPYRYVF 139
           +R   WH+F    G +  ACR RLP+R  +
Sbjct: 145 NRSGHWHVFRGDEGAIPNACRRRLPFRSTY 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,649,967
Number of Sequences: 37544
Number of extensions: 374770
Number of successful extensions: 814
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)