Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0566
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51366| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_1603| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.70 
SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)                   28   5.0  

>SB_51366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -3

Query: 435 DSPF-KLKRVTTSRQK*AGQWYPPARIHKRSYSQ*TRSPTTSKKSATQNK 289
           DSP  K KR+TT++Q+    +Y  A +  ++ ++     + SKK   +NK
Sbjct: 23  DSPGRKKKRMTTNKQRVGSNYYAAANVKNKNRNRSKEKTSRSKKRGKKNK 72


>SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +3

Query: 162 SLLIFIRYAANKILIMIKLIFALLKCTGFGDHDSSGKQSCVTVCFG*RIFYWWLDFL 332
           ++L ++ +  + +L  I  +F L   TGFG        SCV VC   ++ +W LDF+
Sbjct: 23  AVLSYVTFTKSHLLSAI--LFLLCYDTGFGSLLIKAFPSCVLVCGLIQLAWWQLDFV 77


>SB_1603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -3

Query: 435 DSPF-KLKRVTTSRQK*AGQWYPPARIHKRSYSQ*TRSPTTSKKSATQNK 289
           DSP  K KR+TT++Q+    +Y  A +  ++ ++     + SKK   +NK
Sbjct: 89  DSPGRKKKRMTTNKQRVGSNYYAAANVKNKNRNRSKEKTSRSKKRGKKNK 138


>SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)
          Length = 2008

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 250 ETMILVGSNRALLFVLGSGFFTGGWTSCLL 339
           +T IL+      +F+ GSGFF+GG   C L
Sbjct: 549 KTSILLTDLPQDIFITGSGFFSGGGQYCYL 578


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,772,491
Number of Sequences: 59808
Number of extensions: 423228
Number of successful extensions: 816
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)