Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0566
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   3.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.8  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   9.0  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 238 HFNNAKINLIIIRILFAAYLININRERFPIP 146
           ++NN   N    ++ +  Y+INI +   P+P
Sbjct: 332 NYNNNNYNNYNKKLYYKNYIINIEQIPVPVP 362


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 23   LMHAPPAPVCGS 58
            L HAPPA  CG+
Sbjct: 1265 LQHAPPAYSCGT 1276


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 231 LKCTGFGDHDSSGKQSCVTVCFG 299
           LKC     + S+G++ C+  C G
Sbjct: 148 LKCDKCSTYQSNGEEVCLENCTG 170


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 551 LTTNLVANWLLKPID 507
           LT N+   W+L+P D
Sbjct: 673 LTVNVPPRWILEPTD 687


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 485 PTLRLLCS 462
           PTLRLLCS
Sbjct: 75  PTLRLLCS 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,806
Number of Sequences: 438
Number of extensions: 4375
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)