Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0565
         (624 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q29150 Cluster: Kappa-casein; n=34; Laurasiatheria|Rep:...    33   4.2  
UniRef50_UPI0000EBDE35 Cluster: PREDICTED: hypothetical protein;...    32   9.7  
UniRef50_Q92Y56 Cluster: Putative reverse transcriptase; n=2; Si...    32   9.7  
UniRef50_Q6FL05 Cluster: Candida glabrata strain CBS138 chromoso...    32   9.7  
UniRef50_Q4P869 Cluster: Putative uncharacterized protein; n=1; ...    32   9.7  

>UniRef50_Q29150 Cluster: Kappa-casein; n=34; Laurasiatheria|Rep:
           Kappa-casein - Uncia uncia (Snow leopard) (Panthera
           uncia)
          Length = 146

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 120 MHYFVSPFTHKDPSYTLH-PVTEVLGLWFPYPY 215
           +HY +S + H +PSY  H P   V   + PYPY
Sbjct: 12  VHYVLSNYPHYEPSYYPHKPAVPVNNQYMPYPY 44


>UniRef50_UPI0000EBDE35 Cluster: PREDICTED: hypothetical protein;
           n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
           Bos taurus
          Length = 135

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 64  GLGRREPARAASIELTKGVCIILSPPSPIKTPA 162
           G    EPA   + E+ +G CIILSP  P   PA
Sbjct: 102 GAAALEPANPGAREVPRGRCIILSPRPPAPAPA 134


>UniRef50_Q92Y56 Cluster: Putative reverse transcriptase; n=2;
           Sinorhizobium|Rep: Putative reverse transcriptase -
           Rhizobium meliloti (Sinorhizobium meliloti)
          Length = 505

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -2

Query: 206 WEPQAENLSNRV*GVAGVFMGEGGDKIMHTPLVNSIEAARAGSLRPSPS 60
           W+  A N   R  GV G+ +G   ++  H  LV+     R+G+ RPSP+
Sbjct: 48  WQRVASNKGGRTAGVDGMTVGRIRNRSEHRFLVDLQADLRSGAYRPSPA 96


>UniRef50_Q6FL05 Cluster: Candida glabrata strain CBS138 chromosome
           L complete sequence; n=1; Candida glabrata|Rep: Candida
           glabrata strain CBS138 chromosome L complete sequence -
           Candida glabrata (Yeast) (Torulopsis glabrata)
          Length = 777

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
 Frame = +3

Query: 114 GRM-HYFVSPFTHKDPSYTLHPV-TEVLGLWFPYPYRGGYVKFSLVVRYIIYYFLSNLGH 287
           G+M +YFV  +T  D SY  HPV T+        P R  Y+   L    ++++F++    
Sbjct: 113 GKMIYYFVGKYTGFDTSYKYHPVGTQFENASVYLPER--YLAAGLGACVVVFFFMTLRAS 170

Query: 288 GF*TSIAGLGR*GESRSSTLTDRYLYLPRSAPEL 389
           G    IAG+     S  ++      Y+   AP L
Sbjct: 171 GVSRPIAGIFSVALSLENSFITASRYVHLDAPFL 204


>UniRef50_Q4P869 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 428

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 147 HKDPSYTLHPVTEVLGLWFPYPYRGGYVKFSLVVR 251
           HKDP     P  +++  WFP P + G VK  L  R
Sbjct: 264 HKDPKAMSRPHQDMIDRWFPAPTKHGKVKADLTDR 298


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 623,279,416
Number of Sequences: 1657284
Number of extensions: 12491457
Number of successful extensions: 30458
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 29587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30451
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)