Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0565
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.2  
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    26   5.1  
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual       26   5.1  
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    25   8.9  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 138 PFTHKDPSYTLHPVTEVLGLWFPYPY--RGGYVKFSLVVRYIIYYFLSN 278
           PF H +     H  + ++ LW P+P+  R G  K +  V  I +++L +
Sbjct: 409 PFFHSEDIEFEHTASALILLWAPHPFNKRSGATKRAQDVPLIKHWYLEH 457


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 153 DPSYTLHPVTEVLGLWF 203
           DP  T HP  EV G++F
Sbjct: 330 DPDGTFHPAVEVAGIYF 346


>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 364

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 31  HVRTGPFTHREGLGRREPARAASIELTKGVCIILSPPSPIKTPATPY 171
           H + G F H E +G+R   + AS    +G   +L P   + T A P+
Sbjct: 37  HNQYGAFPHSEMIGKRYGEQIAS-TAKQGFIYLLQPTPELWTLALPH 82


>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 468 RFLFRRMSQQNWCSTF*INLNV*SEFTVSNVRCSPTTP 581
           RF+F  + +++W   F   +N+ +E     V C P  P
Sbjct: 164 RFIFTNIDEKDWNKQFSFQINL-AERDYKVVHCHPPLP 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,219
Number of Sequences: 5004
Number of extensions: 49229
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)