Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0565
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0325 + 8972830-8973114                                           29   3.0  
02_03_0176 + 16010806-16011095,16011983-16012061,16012389-160124...    29   4.0  
01_05_0035 + 17440828-17441364                                         29   4.0  
01_04_0012 - 15075505-15075636,15075719-15075784                       29   4.0  
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51...    29   4.0  
04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235     28   5.2  
11_04_0154 + 14172294-14172459,14172993-14173054,14174781-141748...    27   9.2  
06_03_0566 - 22315070-22315093,22315160-22315377,22316801-223169...    27   9.2  
01_01_0844 - 6586345-6586854                                           27   9.2  

>02_02_0325 + 8972830-8973114
          Length = 94

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 441 GH*QDGGGWRGCNECSERVPVHY 373
           G  Q GGG  GC   S R+P+HY
Sbjct: 24  GEQQHGGGGGGCGGSSFRMPLHY 46


>02_03_0176 +
           16010806-16011095,16011983-16012061,16012389-16012464,
           16012541-16012630,16012878-16013031,16013172-16013181,
           16013240-16013407,16014087-16014485,16014580-16014990
          Length = 558

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 414 RGCNECSERVPVHYEAGINSDPLVSTTATRLIFPTL 307
           RG N CS   P++ E  + S PL+      ++ PT+
Sbjct: 171 RGSNSCSSDPPINLEWTLCSTPLMKVPRYNILAPTI 206


>01_05_0035 + 17440828-17441364
          Length = 178

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +1

Query: 136 PPSPIKTPATPYTLLLRFSACGSHTLTVAAMLNFRLWSV 252
           PPSP+ + A P   L R    GSH   VA  +   LW V
Sbjct: 33  PPSPLPSSAEPLHGLCRKPGAGSHRALVATPVR-ALWMV 70


>01_04_0012 - 15075505-15075636,15075719-15075784
          Length = 65

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +1

Query: 1   VTLRPQCAPRH--VRTGPFTHREGLGRREPAR 90
           +++RP+  PRH   R    T+R+GL RR P R
Sbjct: 8   ISMRPERRPRHHHSRHPVATNRQGLPRRRPCR 39


>01_01_0066 -
           513578-513730,513809-513920,514000-514163,514369-514521,
           514598-514736,514823-514923,514995-515666,515953-516038,
           516112-516777,516874-517128,517231-517358,518645-518799,
           518880-519133,519186-519260,519324-519399,519511-519644,
           519871-520153,520692-520850,520940-521038,521142-521310,
           521423-521653,522002-522114,524179-524310,524389-524469,
           525641-525763
          Length = 1570

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 351 DRYLYLPRSAPELARCTRCIRATRLRP 431
           ++Y+Y P S  +L+ C RC  + RL P
Sbjct: 615 EKYIYKPVSELDLSNCQRCTPSYRLLP 641


>04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235
          Length = 416

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -3

Query: 223 PPR*GY--GNHKPRTSVTGCRV*LGS 152
           PPR GY  G+H PR    GC+  L S
Sbjct: 171 PPRGGYTYGHHPPRCQAEGCKADLSS 196


>11_04_0154 +
          14172294-14172459,14172993-14173054,14174781-14174859,
          14174964-14175164,14175420-14175610
          Length = 232

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 13 PQCAPRHVRTGPFTHREGLGRREPAR 90
          P+  P H  TGP TH  G  R+  AR
Sbjct: 12 PENGPNHYATGPRTHLPGPRRKPRAR 37


>06_03_0566 -
           22315070-22315093,22315160-22315377,22316801-22316915,
           22317029-22317031
          Length = 119

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 129 FVSPFTHKDPSYTLHPVTEVLGLWFPYPYRGGYVKFSLVVRYIIY 263
           ++  F H  PS +   VT  +G  F     GG++  +    Y IY
Sbjct: 59  YLMNFMHYSPSQSATTVTNFMGTAFLLALLGGFLSDAFFTTYAIY 103


>01_01_0844 - 6586345-6586854
          Length = 169

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 85  ARAASIELTKGVCIILSPPSPIKTPA 162
           A AA++ L   VC +L  P+P + PA
Sbjct: 6   AAAAALALAAAVCFLLVAPAPARRPA 31


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,440,661
Number of Sequences: 37544
Number of extensions: 365233
Number of successful extensions: 996
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)