Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0565
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15242| Best HMM Match : E2F_TDP (HMM E-Value=6e-14)                 29   4.1  
SB_166| Best HMM Match : Myb_DNA-binding (HMM E-Value=6.7)             28   5.4  
SB_34718| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_15242| Best HMM Match : E2F_TDP (HMM E-Value=6e-14)
          Length = 273

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 177 QGVGCSWGLYG*RGRQNNAYALSQFDRSCARGL 79
           QG+GCS  +    GRQ +   + +F RSCA GL
Sbjct: 175 QGMGCST-VRTYAGRQAHPNEIEEFTRSCASGL 206


>SB_166| Best HMM Match : Myb_DNA-binding (HMM E-Value=6.7)
          Length = 380

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +1

Query: 34  VRTGPFTHREGLGRREPARAASIELTKGVCIILSPPSPIKTPA 162
           V  GP   RE LG+R PA      + KG    + P  P+ T A
Sbjct: 339 VSLGPLDDRESLGKRAPAETQDHRVCKGP---VDPLGPLGTKA 378


>SB_34718| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = +3

Query: 138 PFTHKD---PSYTLHPVTEVLGLWFP 206
           P+TH +   P+Y   P+T+ + LWFP
Sbjct: 150 PYTHVNIRLPTYWASPITQGVCLWFP 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,614,079
Number of Sequences: 59808
Number of extensions: 411287
Number of successful extensions: 1000
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)