Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0565
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting...    29   2.0  
L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting...    29   2.0  
L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting...    29   2.0  
U97405-1|AAB53007.1|  327|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z81137-7|CAB03468.1|   84|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting
           protein protein8, isoform a protein.
          Length = 1132

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -2

Query: 143 EGGDKIMHTPLVNSIEAARAGSLRPSPSLCVKGPVRT*RGAHC--GRR 6
           EGGD +++TP  +S  A R+G  R +     K PVRT R      GRR
Sbjct: 507 EGGDALVNTPTTSSAAARRSGLARNA-----KKPVRTPRAPRSAGGRR 549


>L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting
           protein protein8, isoform b protein.
          Length = 1780

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -2

Query: 143 EGGDKIMHTPLVNSIEAARAGSLRPSPSLCVKGPVRT*RGAHC--GRR 6
           EGGD +++TP  +S  A R+G  R +     K PVRT R      GRR
Sbjct: 507 EGGDALVNTPTTSSAAARRSGLARNA-----KKPVRTPRAPRSAGGRR 549


>L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting
           protein protein8, isoform c protein.
          Length = 1697

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -2

Query: 143 EGGDKIMHTPLVNSIEAARAGSLRPSPSLCVKGPVRT*RGAHC--GRR 6
           EGGD +++TP  +S  A R+G  R +     K PVRT R      GRR
Sbjct: 507 EGGDALVNTPTTSSAAARRSGLARNA-----KKPVRTPRAPRSAGGRR 549


>U97405-1|AAB53007.1|  327|Caenorhabditis elegans Hypothetical
           protein T09B4.5a protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 13  PQCAPRHVRTGPFTHREGLGRREPARAASIELTKGVCIILSPPSPIKTPAT 165
           P  + R     P   R    ++ P+R+AS   T+G     +P +P KTP++
Sbjct: 34  PAKSARKASKSPARARTSNVKKTPSRSASKSATRGRTASKTPKTPSKTPSS 84


>Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical protein
            C31E10.8 protein.
          Length = 1272

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 239  ACGPLYNLLFFVKSRSWLLDLNSRVGK-MRRVAVVDTNGSLFI 364
            AC  LY++ F  K+R + L +   +GK  R+ ++ DT  S ++
Sbjct: 886  ACNLLYDISFDHKTRLFQLSITMNIGKFFRKPSLSDTENSNYV 928


>Z81137-7|CAB03468.1|   84|Caenorhabditis elegans Hypothetical
           protein W02D9.8 protein.
          Length = 84

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 63  GTRPERARARSFYRID*GRMH 125
           G  P+RAR + F+R D  RMH
Sbjct: 34  GGLPQRARGKVFFRTDSARMH 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,077,307
Number of Sequences: 27780
Number of extensions: 283891
Number of successful extensions: 651
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)