Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0564
         (796 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    44   0.003
UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    39   0.13 
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    36   1.5  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 44.4 bits (100), Expect = 0.003
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = -2

Query: 795 VRWVDEFTAHLVLSGYWSP 739
           +RWVDE TAHLVLSGYWSP
Sbjct: 157 LRWVDELTAHLVLSGYWSP 175


>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 39.1 bits (87), Expect = 0.13
 Identities = 17/23 (73%), Positives = 17/23 (73%)
 Frame = +1

Query: 349 MGDGNHSPSAGPYARLPKRAIKK 417
           MGDGNHSPS  PYA LP RA  K
Sbjct: 1   MGDGNHSPSGRPYASLPTRAKMK 23


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 35.5 bits (78), Expect = 1.5
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = +3

Query: 312  KRLGSAPGIAEVHGRR 359
            +RLGSAPGIAEVHGRR
Sbjct: 971  QRLGSAPGIAEVHGRR 986


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 856,220,655
Number of Sequences: 1657284
Number of extensions: 16868065
Number of successful extensions: 34270
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34268
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67908372675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)