Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0564
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    28   1.8  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   9.4  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   9.4  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/40 (27%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -2

Query: 450  LYVL-IMLISTIFFYCPFRQTSIRPS*W*VVTVAHGLQQC 334
            LY++ ++ + TIF+ CP   T +R S + ++++ + +  C
Sbjct: 1277 LYIVHLLFLLTIFYPCPIAYTYVRNSIFLILSICYTINIC 1316


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 787 GGRIHSPPGVKWLLEPIDIH 728
           GG +H P  V WLL P DI+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIY 253


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 99  LHDFIPSPWKSVNIC*VRISLEK 167
           L+  +P PW  VN+C + ++ E+
Sbjct: 241 LYYSVPCPWLQVNLCRILLACER 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,465,014
Number of Sequences: 5004
Number of extensions: 70219
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)